| 2010 |
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| 9 | Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. IEEE Transactions on Information Technology in Biomedicine (14): 1137-1143 (2010). Web SearchBibTeXDownload |
| 2009 |
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| 8 | Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. Journal of Computer-Aided Molecular Design (23): 773-784 (2009). Web SearchBibTeXDownload |
| 7 | Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. Journal of Computer-Aided Molecular Design (23): 785-797 (2009). Web SearchBibTeXDownload |
| 2008 |
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| 6 | Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. BIBM 2008, 199-206. Web SearchBibTeXDownload |
| 2005 |
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| 5 | Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan Prins, Alexander Tropsha. Journal of Computational Biology (12): 657-671 (2005). Cited by 28Web SearchBibTeXDownload |
| 2004 |
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| 4 | Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. Jun Huan, Wei Wang, Anglina Washington, Jan Prins, Ruchir Shah, Alexander Tropsha. Pacific Symposium on Biocomputing 2004, 411-422. Cited by 39Web SearchBibTeXDownload |
| 3 | Mining protein family specific residue packing patterns from protein structure graphs. Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha. RECOMB 2004, 308-315. Web SearchBibTeXDownload |
| 1999 |
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| 2 | Automated Pharmacophore Identification for Large Chemical Data Sets1. Xin Chen, Andrew Rusinko III, Alexander Tropsha, S. Stanley Young. Journal of Chemical Information and Computer Sciences (39): 887-896 (1999). Web SearchBibTeXDownload |
| 1 | Generalized linear response method: Application to hydration free energy calculations. Xin Chen, Alexander Tropsha. Journal of Computational Chemistry (20): 749-759 (1999). Web SearchBibTeXDownload |
