| 2010 |
|---|
| 18 | PROSESS: a protein structure evaluation suite and server. Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart. Nucleic Acids Research (38): 633-640 (2010). Web SearchBibTeXDownload |
| 2009 |
|---|
| 17 | GeNMR: a web server for rapid NMR-based protein structure determination. Mark V. Berjanskii, Peter Tang, Jack Liang, Joseph A. Cruz, Jianjun Zhou, You Zhou, Edward Bassett, Cam Macdonell, Paul Lu, Guohui Lin, David S. Wishart. Nucleic Acids Research (37): 670-677 (2009). Web SearchBibTeXDownload |
| 16 | HMDB: a knowledgebase for the human metabolome. David S. Wishart, Craig Knox, Anchi Guo, Roman Eisner, Nelson Young, Bijaya Gautam, David D. Hau, Nick Psychogios, Edison Dong, Souhaila Bouatra, Rupasri Mandal, Igor Sinelnikov, Jianguo Xia, Leslie Jia, Joseph A. Cruz, Emilia Lim, Constance A. Sobsey, Savita Shrivastava, Paul Huang, Philip Liu, Lydia Fang, Jun Peng, Ryan Fradette, Dean Cheng, Dan Tzur, Melisa Clements, Avalyn Lewis, Andrea De Souza, Azaret Zuniga, Margot Dawe, Yeping Xiong, Derrick Clive, Russell Greiner, Alsu Nazyrova, Rustem Shaykhutdinov, Liang Li, Hans J. Vogel, Ian J. Forsythe. Nucleic Acids Research (37): 603-610 (2009). Web SearchBibTeXDownload |
| 2008 |
|---|
| 15 | Protein contact order prediction from primary sequences. Yi Shi, Jianjun Zhou, David Arndt, David S. Wishart, Guohui Lin. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload |
| 14 | PPT-DB: the protein property prediction and testing database. David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin. Nucleic Acids Research (36): 222-229 (2008). Web SearchBibTeXDownload |
| 13 | CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. David S. Wishart, David Arndt, Mark V. Berjanskii, Peter Tang, Jianjun Zhou, Guohui Lin. Nucleic Acids Research (36): 496-502 (2008). Web SearchBibTeXDownload |
| 2007 |
|---|
| 12 | HMDB: the Human Metabolome Database. David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser. Nucleic Acids Research (35): 521-526 (2007). Web SearchBibTeXDownload |
| 11 | Session Introduction. Trey Ideker, Philip E. Bourne, Roy Kerckhoffs, Predrag Radivojac, Marco Punta, Maricel G. Kann, Maricel G. Kann. Pacific Symposium on Biocomputing 2007, 205-208. Web SearchBibTeXDownload |
| 2006 |
|---|
| 10 | Visual Explanation of Evidence with Additive Classifiers. Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Cam Macdonell, John Anvik. AAAI 2006. Web SearchBibTeX |
| 2005 |
|---|
| 9 | The Proteome Analyst Suite of Automated Function Prediction Tools. Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu. AAAI 2005, 1698-1699. Web SearchBibTeX |
| 8 | Pathway Analyst--Automated Metabolic Pathway Prediction. Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart. CIBCB 2005, 243-250. Web SearchBibTeX |
| 7 | PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, Nicholas Lamb. Nucleic Acids Research (33): 147-153 (2005). Web SearchBibTeXDownload |
| 6 | BASys: a web server for automated bacterial genome annotation. Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart. Nucleic Acids Research (33): 455-459 (2005). Web SearchBibTeXDownload |
| 2004 |
|---|
| 5 | Predicting subcellular localization of proteins using machine-learned classifiers. Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner. Bioinformatics (20): 547-556 (2004). Web SearchBibTeXDownload |
| 4 | Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis. Nucleic Acids Research (32): 365-371 (2004). Web SearchBibTeX |
| 2003 |
|---|
| 3 | VADAR: a web server for quantitative evaluation of protein structure quality. Leigh Willard, Anuj Ranjan, Haiyan Zhang, Hassan Monzavi, Robert F. Boyko, Brian D. Sykes, David S. Wishart. Nucleic Acids Research (31): 3316-3319 (2003). Web SearchBibTeXDownload |
| 1997 |
|---|
| 2 | A platform-independent graphical user interface for SEQSEE and XALIGN. David S. Wishart, S. Fortin, David R. Woloschuk, W. Wong, T. Rosborough, Gary H. Van Domselaar, Jonathan Schaeffer, Duane Szafron. Computer Applications in the Biosciences (13): 561-562 (1997). Web SearchBibTeXDownload |
| 1994 |
|---|
| 1 | SEQSEE: a comprehensive program suite for protein sequence analysis. David S. Wishart, Robert F. Boyko, Leigh Willard, Frederic M. Richards, Brian D. Sykes. Computer Applications in the Biosciences (10): 121-132 (1994). Web SearchBibTeXDownload |
