| 2011 |
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| 24 | HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods. Li C. Xue, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (12): 244 (2011). Web SearchBibTeXDownload |
| 23 | Predicting MHC-II Binding Affinity Using Multiple Instance Regression. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 1067-1079 (2011). Web SearchBibTeXDownload |
| 22 | PRIDB: a protein-RNA interface database. Benjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (39): 277-282 (2011). Web SearchBibTeXDownload |
| 2010 |
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| 21 | Struct-NB: predicting protein-RNA binding sites using structural features. Fadi Towfic, Cornelia Caragea, David C. Gemperline, Drena Dobbs, Vasant Honavar. IJDMB (4): 21-43 (2010). Web SearchBibTeXDownload |
| 2009 |
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| 20 | Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload |
| 2008 |
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| 19 | Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. BIBM 2008, 289-292. Web SearchBibTeXDownload |
| 18 | Using Global Sequence Similarity to Enhance Biological Sequence Labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BIBM 2008, 104-111. Web SearchBibTeXDownload |
| 17 | Striking Similarities in Diverse Telomerase Proteins Revealed by Combining Structure Prediction and Machine Learning Approaches. Jae-Hyung Lee, Michael Hamilton, Colin Gleeson, Cornelia Caragea, Peter Zaback, Jeffry D. Sander, Li C. Xue, Feihong Wu, Michael Terribilini, Vasant Honavar, Drena Dobbs. Pacific Symposium on Biocomputing 2008, 501-512. Web SearchBibTeXDownload |
| 2007 |
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| 16 | Assessing the Performance of Macromolecular Sequence Classifiers. Cornelia Caragea, Jivko Sinapov, Vasant Honavar, Drena Dobbs. BIBE 2007, 320-326. Web SearchBibTeXDownload |
| 15 | Analysis of Protein Protein Dimeric Interfaces. Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honavar. BIBM 2007, 35. Web SearchBibTeXDownload |
| 14 | Glycosylation site prediction using ensembles of Support Vector Machine classifiers. Cornelia Caragea, Jivko Sinapov, Adrian Silvescu, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload |
| 13 | Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. Carson M. Andorf, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload |
| 12 | RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Michael Terribilini, Jeffry D. Sander, Jae-Hyung Lee, Peter Zaback, Robert L. Jernigan, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (35): 578-584 (2007). Web SearchBibTeXDownload |
| 2006 |
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| 11 | Predicting DNA-binding sites of proteins from amino acid sequence. Changhui Yan, Michael Terribilini, Feihong Wu, Robert L. Jernigan, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (7): 262 (2006). Web SearchBibTeXDownload |
| 2005 |
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| 10 | Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and Rna Binding Sites in Rev Proteins of Hiv-1 and Eiav Agree with Experimental Data. Michael Terribilini, Jae-Hyung Lee, Changhui Yan, Robert L. Jernigan, Susan Carpenter, Vasant Honavar, Drena Dobbs. CoRR (abs/cs/0511075) (2005). Web SearchBibTeXDownload |
| 9 | Information Integration from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DEXA Workshops 2005, 580-584. Web SearchBibTeXDownload |
| 8 | Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DILS 2005, 175-190. Web SearchBibTeXDownload |
| 2004 |
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| 7 | Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs. BMC Bioinformatics (5): 205 (2004). Web SearchBibTeXDownload |
| 6 | A two-stage classifier for identification of protein-protein interface residues. Changhui Yan, Drena Dobbs, Vasant Honavar. ISMB/ECCB (Supplement of Bioinformatics) 2004, 371-378. Web SearchBibTeXDownload |
| 5 | Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach. Changhui Yan, Vasant Honavar, Drena Dobbs. Neural Computing and Applications (13): 123-129 (2004). Web SearchBibTeXDownload |
| 2003 |
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| 4 | Automated data-driven discovery of motif-based protein function classifiers. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. Inf. Sci. (155): 1-18 (2003). Web SearchBibTeXDownload |
| 2002 |
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| 3 | Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. JCIS 2002, 1193-1199. Web SearchBibTeX |
| 2 | Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences. Carson M. Andorf, Drena Dobbs, Vasant Honavar. JCIS 2002, 1200-1206. Web SearchBibTeX |
| 1999 |
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| 1 | Data-Driven Theory Refinement Using KBDistAl. Jihoon Yang, Rajesh Parekh, Vasant Honavar, Drena Dobbs. IDA 1999, 331-342. Web SearchBibTeXDownload |
