2013
43Characterizing and profiling scientific workflows. Gideon Juve, Ann L. Chervenak, Ewa Deelman, Shishir Bharathi, Gaurang Mehta, Karan Vahi. Future Generation Comp. Syst. (29): 682-692 (2013). Web SearchBibTeXDownload
2012
42A General Approach to Real-Time Workflow Monitoring. Karan Vahi, Ian Harvey, Taghrid Samak, Daniel K. Gunter, Kieran Evans, Dave Rogers, Ian Taylor, Monte Goode, Fabio Silva, Eddie Al-Shakarchi, Gaurang Mehta, Andrew Jones, Ewa Deelman. SC Companion 2012, 108-118. Web SearchBibTeXDownload
2011
41RseqFlow: workflows for RNA-Seq data analysis. Ying Wang, Gaurang Mehta, Rajiv Mayani, Jingxi Lu, Tade Souaiaia, Yangho Chen, Andrew P. Clark, Hee Jae Yoon, Lin Wan, Oleg V. Evgrafov, James A. Knowles, Ewa Deelman, Ting Chen. Bioinformatics (27): 2598-2600 (2011). Web SearchBibTeXDownload
40Online workflow management and performance analysis with Stampede. Dan Gunter, Ewa Deelman, Taghrid Samak, Christopher X. Brooks, Monte Goode, Gideon Juve, Gaurang Mehta, Priscilla Moraes, Fabio Silva, D. Martin Swany, Karan Vahi. CNSM 2011, 1-10. Web SearchBibTeXDownload
39Experiences Using GlideinWMS and the Corral Frontend across Cyberinfrastructures. Mats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan. eScience 2011, 311-318. Web SearchBibTeXDownload
38A Cloud-based Dynamic Workflow for Mass Spectrometry Data Analysis. Ashish Nagavaram, Gagan Agrawal, Michael A. Freitas, Kelly H. Telu, Gaurang Mehta, Rajiv Mayani, Ewa Deelman. eScience 2011, 47-54. Web SearchBibTeXDownload
37Enabling Data and Compute Intensive Workflows in Bioinformatics. Gaurang Mehta, Ewa Deelman, James A. Knowles, Ting Chen, Ying Wang, Jens-S. Vöckler, Steven Buyske, Tara Cox Matise. Euro-Par Workshops (2) 2011, 23-32. Web SearchBibTeXDownload
36Online Fault and Anomaly Detection for Large-Scale Scientific Workflows. Taghrid Samak, Dan Gunter, Monte Goode, Ewa Deelman, Gideon Juve, Gaurang Mehta, Fabio Silva, Karan Vahi. HPCC 2011, 373-381. Web SearchBibTeXDownload
35Metrics for heterogeneous scientific workflows: A case study of an earthquake science application. Scott Callaghan, Philip Maechling, Patrick Small, Kevin Milner, Gideon Juve, Thomas Jordan, Ewa Deelman, Gaurang Mehta, Karan Vahi, Dan Gunter, Keith Beattie, Christopher X. Brooks. IJHPCA (25): 274-285 (2011). Web SearchBibTeXDownload
34New tools and methods for direct programmatic access to the dbSNP relational database. Scott F. Saccone, Jiaxi Quan, Gaurang Mehta, Raphael Bolze, Prasanth Thomas, Ewa Deelman, Jay A. Tischfield, John P. Rice. Nucleic Acids Research (39): 901-907 (2011). Web SearchBibTeXDownload
2010
33Parameterized specification, configuration and execution of data-intensive scientific workflows. Vijay S. Kumar, Tahsin M. Kurç, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoon-Ju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary W. Hall, Joel H. Saltz. Cluster Computing (13): 315-333 (2010). Web SearchBibTeXDownload
32Scientific Workflow Applications on Amazon EC2. Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, G. Bruce Berriman, Benjamin P. Berman, Philip Maechling. CoRR (abs/1005.2718) (2010). Web SearchBibTeXDownload
31Data Sharing Options for Scientific Workflows on Amazon EC2. Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta, G. Bruce Berriman, Benjamin P. Berman, Philip Maechling. CoRR (abs/1010.4822) (2010). Web SearchBibTeXDownload
30Pipeline-Centric Provenance Model. Paul T. Groth, Ewa Deelman, Gideon Juve, Gaurang Mehta, G. Bruce Berriman. CoRR (abs/1005.4457) (2010). Web SearchBibTeXDownload
29SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study. Scott F. Saccone, Raphael Bolze, Prasanth Thomas, Jiaxi Quan, Gaurang Mehta, Ewa Deelman, Jay A. Tischfield, John R. Rice. Nucleic Acids Research (38): 201-209 (2010). Web SearchBibTeXDownload
28Experiences with resource provisioning for scientific workflows using Corral. Gideon Juve, Ewa Deelman, Karan Vahi, Gaurang Mehta. Scientific Programming (18): 77-92 (2010). Web SearchBibTeXDownload
2009
27Adaptive workflow processing and execution in Pegasus. Kevin Lee, Norman W. Paton, Rizos Sakellariou, Ewa Deelman, Alvaro A. A. Fernandes, Gaurang Mehta. Concurrency and Computation: Practice and Experience (21): 1965-1981 (2009). Web SearchBibTeXDownload
26An integrated framework for performance-based optimization of scientific workflows. Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz. HPDC 2009, 177-186. Web SearchBibTeXDownload
25Pipeline-centric provenance model. Paul T. Groth, Ewa Deelman, Gideon Juve, Gaurang Mehta, G. Bruce Berriman. SC-WORKS 2009. Web SearchBibTeXDownload
2008
24Provenance: The Bridge Between Experiments and Data. Simon Miles, Paul T. Groth, Ewa Deelman, Karan Vahi, Gaurang Mehta, Luc Moreau. Computing in Science and Engineering (10): 38-46 (2008). Web SearchBibTeXDownload
23Special Issue: The First Provenance Challenge. Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul T. Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao. Concurrency and Computation: Practice and Experience (20): 409-418 (2008). Cited by 72Web SearchBibTeXDownload
22Provenance trails in the Wings/Pegasus system. Jihie Kim, Ewa Deelman, Yolanda Gil, Gaurang Mehta, Varun Ratnakar. Concurrency and Computation: Practice and Experience (20): 587-597 (2008). Web SearchBibTeXDownload
21Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake. Scott Callaghan, Philip Maechling, Ewa Deelman, Karan Vahi, Gaurang Mehta, Gideon Juve, Kevin Milner, Robert Graves, Edward Field, David Okaya, Dan Gunter, Keith Beattie, Thomas Jordan. eScience 2008, 151-158. Web SearchBibTeXDownload
20Estimating Resource Needs for Time-Constrained Workflows. Eun-Kyu Byun, Yang-Suk Kee, Ewa Deelman, Karan Vahi, Gaurang Mehta, Jin-Soo Kim. eScience 2008, 31-38. Web SearchBibTeXDownload
19On the Use of Cloud Computing for Scientific Workflows. Christina Hoffa, Gaurang Mehta, Timothy Freeman, Ewa Deelman, Kate Keahey, G. Bruce Berriman, John Good. eScience 2008, 640-645. Web SearchBibTeXDownload
18Adaptive Workflow Processing and Execution in Pegasus. Kevin Lee, Norman W. Paton, Rizos Sakellariou, Ewa Deelman, Alvaro A. A. Fernandes, Gaurang Mehta. GPC Workshops 2008, 99-106. Web SearchBibTeXDownload
17Workflow task clustering for best effort systems with Pegasus. Gurmeet Singh, Mei-Hui Su, Karan Vahi, Ewa Deelman, G. Bruce Berriman, John Good, Daniel S. Katz, Gaurang Mehta. Mardi Gras Conference 2008, 9. Web SearchBibTeXDownload
2007
16Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows. Yolanda Gil, Varun Ratnakar, Ewa Deelman, Gaurang Mehta, Jihie Kim. AAAI 2007, 1767-1774. Web SearchBibTeXDownload
15Connecting Scientific Data to Scientific Experiments with Provenance. Simon Miles, Ewa Deelman, Paul T. Groth, Karan Vahi, Gaurang Mehta, Luc Moreau. eScience 2007, 179-186. Web SearchBibTeXDownload
14Data placement for scientific applications in distributed environments. Ann L. Chervenak, Ewa Deelman, Miron Livny, Mei-Hui Su, Robert Schuler, Shishir Bharathi, Gaurang Mehta, Karan Vahi. GRID 2007, 267-274. Web SearchBibTeXDownload
13Optimizing workflow data footprint. Gurmeet Singh, Karan Vahi, Arun Ramakrishnan, Gaurang Mehta, Ewa Deelman, Henan Zhao, Rizos Sakellariou, Kent Blackburn, Duncan Brown, Stephen Fairhurst, David Meyers, G. Bruce Berriman, John Good, Daniel S. Katz. Scientific Programming (15): 249-268 (2007). Web SearchBibTeXDownload
2006
12Managing Large-Scale Workflow Execution from Resource Provisioning to Provenance Tracking: The CyberShake Example. Ewa Deelman, Scott Callaghan, Edward Field, Hunter Francoeur, Robert Graves, Nitin Gupta, Vipin Gupta, Thomas Jordan, Carl Kesselman, Philip Maechling, John Mehringer, Gaurang Mehta, David Okaya, Karan Vahi, Li Zhao. e-Science 2006, 14. Cited by 35Web SearchBibTeXDownload
11Automating Climate Science: Large Ensemble Simulations on the TeraGrid with the GriPhyN Virtual Data System. Veronika Nefedova, Robert L. Jacob, Ian T. Foster, Zhengyu Liu, Yun Liu, Ewa Deelman, Gaurang Mehta, Mei-Hui Su, Karan Vahi. e-Science 2006, 32. Web SearchBibTeXDownload
2005
10Performance Prediction-based versus Load-based Site Selection: Quantifying the Difference. Seung-Hye Jang, Valerie E. Taylor, Xingfu Wu, Mieke Prajugo, Ewa Deelman, Gaurang Mehta, Karan Vahi. ISCA PDCS 2005, 148-153. Web SearchBibTeX
9The Pegasus portal: web based grid computing. Gurmeet Singh, Ewa Deelman, Gaurang Mehta, Karan Vahi, Mei-Hui Su, G. Bruce Berriman, John Good, Joseph C. Jacob, Daniel S. Katz, Albert Lazzarini, Kent Blackburn, Scott Koranda. SAC 2005, 680-686. Web SearchBibTeXDownload
8Pegasus: A framework for mapping complex scientific workflows onto distributed systems. Ewa Deelman, Gurmeet Singh, Mei-Hui Su, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, G. Bruce Berriman, John Good, Anastasia C. Laity, Joseph C. Jacob, Daniel S. Katz. Scientific Programming (13): 219-237 (2005). Web SearchBibTeXDownload
7Simplifying construction of complex workflows for non-expert users of the Southern California Earthquake Center Community Modeling Environment. Philip Maechling, Hans Chalupsky, Maureen Dougherty, Ewa Deelman, Yolanda Gil, Sridhar Gullapalli, Vipin Gupta, Carl Kesselman, Jihie Kim, Gaurang Mehta, Brian Mendenhall, Thomas A. Russ, Gurmeet Singh, Marc Spraragen, Garrick Staples, Karan Vahi. SIGMOD Record (34): 24-30 (2005). Web SearchBibTeXDownload
2004
6Pegasus: Mapping Scientific Workflows onto the Grid. Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Sonal Patil, Mei-Hui Su, Karan Vahi, Miron Livny. European Across Grids Conference 2004, 11-20. Web SearchBibTeXDownload
5The Grid2003 Production Grid: Principles and Practice. Ian T. Foster, Jerry Gieraltowski, Scott Gose, Natalia Maltsev, Edward N. May, Alex Rodriguez, Dinanath Sulakhe, A. Vaniachine, Jim Shank, Saul Youssef, David Adams, Richard Baker, Wensheng Deng, Jason Smith, Dantong Yu, Iosif Legrand, Suresh Singh, Conrad Steenberg, Yang Xia, M. Anzar Afaq, Eileen Berman, James Annis, L. A. T. Bauerdick, Michael Ernst, Ian Fisk, Lisa Giacchetti, Gregory E. Graham, Anne Heavey, Joseph Kaiser, Nickolai Kuropatkin, Ruth Pordes, Vijay Sekhri, John Weigand, Yujun Wu, Keith Baker, Lawrence Sorrillo, John Huth, Matthew Allen, Leigh Grundhoefer, John Hicks, Fred Luehring, Steve Peck, Rob Quick, Stephen C. Simms, George Fekete, Jan vandenBerg, Kihyeon Cho, Kihwan Kwon, Dongchul Son, Hyoungwoo Park, Shane Canon, Keith R. Jackson, David E. Konerding, Jason Lee, Doug Olson, Iwona Sakrejda, Brian Tierney, Mark Green, Russ Miller, James Letts, Terrence Martin, David Bury, Catalin Dumitrescu, Daniel Engh, Robert Gardner, Marco Mambelli, Yuri Smirnov, Jens-S. Vöckler, Michael Wilde, Yong Zhao, Xin Zhao, Paul Avery, Richard Cavanaugh, Bockjoo Kim, Craig Prescott, Jorge Luis Rodriguez, Andrew Zahn, Shawn McKee, Christopher T. Jordan, James E. Prewett, Timothy L. Thomas, Horst Severini, Ben Clifford, Ewa Deelman, Larry Flon, Carl Kesselman, Gaurang Mehta, Nosa Olomu, Karan Vahi, Kaushik De, Patrick McGuigan, Mark Sosebee, Dan Bradley, Peter Couvares, Alan DeSmet, Carey Kireyev, Erik Paulson, Alain Roy, Scott Koranda, Brian Moe, Bobby Brown, Paul Sheldon. HPDC 2004, 236-245. Cited by 97Web SearchBibTeXDownload
2003
4The Role of Planning in Grid Computing. Jim Blythe, Ewa Deelman, Yolanda Gil, Carl Kesselman, Amit Agarwal, Gaurang Mehta, Karan Vahi. ICAPS 2003, 153-163. Web SearchBibTeXDownload
3Mapping Abstract Complex Workflows onto Grid Environments. Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Gaurang Mehta, Karan Vahi, Kent Blackburn, Albert Lazzarini, Adam Arbree, Richard Cavanaugh, Scott Koranda. J. Grid Comput. (1): 25-39 (2003). Web SearchBibTeXDownload
2Pegasus and the Pulsar Search: From Metadata to Execution on the Grid. Ewa Deelman, James Blythe, Yolanda Gil, Carl Kesselman, Scott Koranda, Albert Lazzarini, Gaurang Mehta, Maria Alessandra Papa, Karan Vahi. PPAM 2003, 821-830. Web SearchBibTeXDownload
2002
1GriPhyN and LIGO, Building a Virtual Data Grid for Gravitational Wave Scientists. Ewa Deelman, Carl Kesselman, Gaurang Mehta, Leila Meshkat, Laura Pearlman, Kent Blackburn, Phil Ehrens, Albert Lazzarini, Roy Williams, Scott Koranda. HPDC 2002, 225. Web SearchBibTeXDownload
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