Guohui Lin

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2011
54An Improved Approximation Algorithm for the Complementary Maximal Strip Recovery Problem. Zhong Li, Randy Goebel, Lusheng Wang, Guohui Lin. FAW-AAIM 2011, 46-57. Web SearchBibTeXDownload
53Enhancement of incremental design for FPGAs using circuit similarity. Xiaoyu Shi, Dahua Zeng, Yu Hu, Guohui Lin, Osmar R. Zaïane. ISQED 2011, 243-250. Web SearchBibTeXDownload
52Size-constrained tree partitioning: Approximating the multicast k-tree routing problem. Zhipeng Cai, Randy Goebel, Guohui Lin. Theor. Comput. Sci. (412): 240-245 (2011). Web SearchBibTeXDownload
2010
51Randomized Approaches for Nearest Neighbor Search in Metric Space When Computing the Pairwise Distance Is Extremely Expensive. Lusheng Wang, Yong Yang, Guohui Lin. AAIM 2010, 243-252. Web SearchBibTeXDownload
50Accelerating FPGA design space exploration using circuit similarity-based placement. Xiaoyu Shi, Dahua Zeng, Yu Hu, Guohui Lin, Osmar R. Zaïane. FPT 2010, 373-376. Web SearchBibTeXDownload
49Finding the Nearest Neighbors in Biological Databases Using Less Distance Computations. Jianjun Zhou, Jörg Sander, Zhipeng Cai, Lusheng Wang, Guohui Lin. IEEE/ACM Trans. Comput. Biology Bioinform. (7): 669-680 (2010). Web SearchBibTeXDownload
48PROSESS: a protein structure evaluation suite and server. Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart. Nucleic Acids Research (38): 633-640 (2010). Web SearchBibTeXDownload
2009
47Most parsimonious haplotype allele sharing determination. Zhipeng Cai, Hadi Sabaa, Yining Wang, Randy Goebel, Zhiquan Wang, Jiaofen Xu, Paul Stothard, Guohui Lin. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload
46Size-Constrained Tree Partitioning: A Story on Approximation Algorithm Design for the Multicast k-Tree Routing Problem. Zhipeng Cai, Randy Goebel, Guohui Lin. COCOA 2009, 363-374. Web SearchBibTeXDownload
45GeNMR: a web server for rapid NMR-based protein structure determination. Mark V. Berjanskii, Peter Tang, Jack Liang, Joseph A. Cruz, Jianjun Zhou, You Zhou, Edward Bassett, Cam Macdonell, Paul Lu, Guohui Lin, David S. Wishart. Nucleic Acids Research (37): 670-677 (2009). Web SearchBibTeXDownload
2008
44Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability. Gang Wu, Ming-Yang Kao, Guohui Lin, Jia-Huai You. Algorithms for Molecular Biology (3) (2008). Web SearchBibTeXDownload
43Protein contact order prediction from primary sequences. Yi Shi, Jianjun Zhou, David Arndt, David S. Wishart, Guohui Lin. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload
42Identifying a few foot-and-mouth disease virus signature nucleotide strings for computational genotyping. Guohui Lin, Zhipeng Cai, Junfeng Wu, Xiu-Feng Wan, Lizhe Xu, Randy Goebel. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload
41PPT-DB: the protein property prediction and testing database. David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin. Nucleic Acids Research (36): 222-229 (2008). Web SearchBibTeXDownload
40CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. David S. Wishart, David Arndt, Mark V. Berjanskii, Peter Tang, Jianjun Zhou, Guohui Lin. Nucleic Acids Research (36): 496-502 (2008). Web SearchBibTeXDownload
2007
39Selecting Genes with Dissimilar Discrimination Strength for Sample Class Prediction. Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipour, Yi Shi, Lizhe Xu, Guohui Lin. APBC 2007, 81-90. Web SearchBibTeXDownload
38Nucleotide composition string selection in HIV-1 subtyping using whole genomes. Xiaomeng Wu, Zhipeng Cai, Xiu-Feng Wan, Tin Hoang, Randy Goebel, Guohui Lin. Bioinformatics (23): 1744-1752 (2007). Web SearchBibTeXDownload
37Selecting dissimilar genes for multi-class classification, an application in cancer subtyping. Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipour, Guohui Lin. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload
36Quartet-Based Phylogeny Reconstruction with Answer Set Programming. Gang Wu, Jia-Huai You, Guohui Lin. IEEE/ACM Trans. Comput. Biology Bioinform. (4): 139-152 (2007). Web SearchBibTeXDownload
35Efficient composite pattern finding from monad patterns. Jianjun Zhou, Jörg Sander, Guohui Lin. IJBRA (3): 86-99 (2007). Web SearchBibTeXDownload
2006
34Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments. Rimon Mikhaiel, Guohui Lin, Eleni Stroulia. BIBE 2006, 149-158. Web SearchBibTeX
33Using Gene Clustering to Identify Discriminatory Genes with Higher Classification Accuracy. Zhipeng Cai, Lizhe Xu, Yi Shi, Mohammad R. Salavatipour, Randy Goebel, Guohui Lin. BIBE 2006, 235-242. Web SearchBibTeX
32A stable gene selection in microarray data analysis. Kun Yang, Zhipeng Cai, Jianzhong Li, Guohui Lin. BMC Bioinformatics (7): 228 (2006). Web SearchBibTeXDownload
31A Model-Free Greedy Gene Selection for Microarray Sample Class Prediction. Yi Shi, Zhipeng Cai, Lizhe Xu, Wei Ren, Randy Goebel, Guohui Lin. CIBCB 2006, 1-8. Web SearchBibTeXDownload
30Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. Xiaomeng Wu, Xiu-Feng Wan, Gang Wu, Dong Xu, Guohui Lin. IJBRA (2): 219-248 (2006). Web SearchBibTeXDownload
29Vertex covering by paths on trees with its applications in machine translation. Guohui Lin, Zhipeng Cai, Dekang Lin. Inf. Process. Lett. (97): 73-81 (2006). Web SearchBibTeXDownload
28A polynomial time algorithm for the minimum quartet inconsistency problem with O(n) quartet errors. Gang Wu, Jia-Huai You, Guohui Lin. Inf. Process. Lett. (100): 167-171 (2006). Web SearchBibTeXDownload
2005
27Faster solution to the maximum quartet consistency problem with constraint programming. Gang Wu, Guohui Lin, Jia-Huai You, Xiaomeng Wu. APBC 2005, 329-338. Web SearchBibTeXDownload
26A Model-Free and Stable Gene Selection in Microarray Data Analysis. Kun Yang, Jianzhong Li, Zhipeng Cai, Guohui Lin. BIBE 2005, 3-10. Web SearchBibTeXDownload
25A Polynomial Algorithm for the Minimum Quartet Inconsistency Problem with O(n) Quartet Errors. Gang Wu, Jia-Huai You, Guohui Lin. CSB Workshops 2005, 55-56. Web SearchBibTeXDownload
24More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Romeo Rizzi, Dong Xu, Ying Xu, Ying Xu. Journal of Computational Biology (12): 129-146 (2005). Web SearchBibTeXDownload
23Application of Smodels in Quartet Based Phylogeny Construction. Gang Wu, Jia-Huai You, Guohui Lin. LPNMR 2005, 369-373. Web SearchBibTeXDownload
22A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem. Gang Wu, Jia-Huai You, Guohui Lin. WABI 2005, 65-76. Web SearchBibTeXDownload
2004
21Quartet Based Phylogeny Reconstruction with Answer Set Programming. Gang Wu, Guohui Lin, Jia-Huai You. ICTAI 2004, 612-619. Web SearchBibTeXDownload
20A Further Improved Approximation Algorithm for Breakpoint Graph Decomposition. Guohui Lin, Tao Jiang. J. Comb. Optim. (8): 183-194 (2004). Web SearchBibTeXDownload
19The longest common subsequence problem for arc-annotated sequences. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang. J. Discrete Algorithms (2): 257-270 (2004). Web SearchBibTeXDownload
18A space-efficient algorithm for sequence alignment with inversions and reversals. Zhi-Zhong Chen, Yong Gao, Guohui Lin, Robert Niewiadomski, Yang Wang, Junfeng Wu. Theor. Comput. Sci. (325): 361-372 (2004). Web SearchBibTeXDownload
2003
17A Space Efficient Algorithm for Sequence Alignment with Inversions. Yong Gao, Junfeng Wu, Robert Niewiadomski, Yang Wang, Zhi-Zhong Chen, Guohui Lin. COCOON 2003, 57-67. Web SearchBibTeXDownload
16More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Romeo Rizzi, Dong Xu, Ying Xu, Ying Xu. ESA 2003, 580-592. Web SearchBibTeXDownload
15Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu. J. Bioinformatics and Computational Biology (1): 387-410 (2003). Web SearchBibTeXDownload
14Tight Bounds on the Competitive Ratio on Accommodating Sequences for the Seat Reservation Problem. Eric Bach, Joan Boyar, Leah Epstein, Lene M. Favrholdt, Tao Jiang, Kim S. Larsen, Guo-Hui Lin, Rob van Stee. J. Scheduling (6): 131-147 (2003). Web SearchBibTeXDownload
13Protein Threading by Linear Programming. Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu. Pacific Symposium on Biocomputing 2003, 264-275. Web SearchBibTeXDownload
12Computing Phylogenetic Roots with Bounded Degrees and Errors. Zhi-Zhong Chen, Tao Jiang, Guohui Lin. SIAM J. Comput. (32): 864-879 (2003). Web SearchBibTeXDownload
11Approximation algorithms for NMR spectral peak assignment. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu. Theor. Comput. Sci. (1-3): 211-229 (2003). Web SearchBibTeXDownload
2002
10An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu. CSB 2002, 165-174. Web SearchBibTeXDownload
9The longest common subsequence problem for sequences with nested arc annotations. Guo-Hui Lin, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen. J. Comput. Syst. Sci. (65): 465-480 (2002). Web SearchBibTeXDownload
8A General Edit Distance between RNA Structures. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang. Journal of Computational Biology (9): 371-388 (2002). Web SearchBibTeX
7Improved Approximation Algorithms for NMR Spectral Peak Assignment. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu. WABI 2002, 82-96. Web SearchBibTeXDownload
2001
6The Longest Common Subsequence Problem for Sequences with Nested Arc Annotations. Guo-Hui Lin, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen. ICALP 2001, 444-455. Web SearchBibTeXDownload
5Edit distance between two RNA structures. Guohui Lin, Bin Ma, Kaizhong Zhang. RECOMB 2001, 211-220. Web SearchBibTeXDownload
4Computing Phylogenetic Roots with Bounded Degrees and Errors. Zhi-Zhong Chen, Tao Jiang, Guohui Lin. WADS 2001, 377-388. Web SearchBibTeXDownload
2000
3Better Bounds on the Accommodating Ratio for the Seat Reservation Problem. Eric Bach, Joan Boyar, Tao Jiang, Kim S. Larsen, Guo-Hui Lin. COCOON 2000, 221-231. Web SearchBibTeXDownload
2The Longest Common Subsequence Problem for Arc-Annotated Sequences. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang. CPM 2000, 154-165. Web SearchBibTeXDownload
1Phylogenetic k-Root and Steiner k-Root. Guo-Hui Lin, Tao Jiang, Paul E. Kearney. ISAAC 2000, 539-551. Web SearchBibTeXDownload
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