2012
26Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia. Xia Bi, Hongzhan Huang, Sherri Matis-Mitchell, Peter B. McGarvey, Manabu Torii, Hagit Shatkay, Cathy H. Wu. BIBM 2012, 1-4. Web SearchBibTeXDownload
25Robust segmentation of biomedical figures for image-based document retrieval. Luis D. Lopez, Jingyi Yu, Catalina O. Tudor, Cecilia N. Arighi, Hongzhan Huang, K. Vijay-Shanker, Cathy H. Wu. BIBM 2012, 1-6. Web SearchBibTeXDownload
2011
24An Automatic System for Extracting Figures and Captions in Biomedical PDF Documents. Luis D. Lopez, Jingyi Yu, Cecilia N. Arighi, Hongzhan Huang, Hagit Shatkay, Cathy H. Wu. BIBM 2011, 578-581. Web SearchBibTeXDownload
23A comprehensive protein-centric ID mapping service for molecular data integration. Hongzhan Huang, Peter B. McGarvey, Baris E. Suzek, Raja Mazumder, Jian Zhang, Yongxing Chen, Cathy H. Wu. Bioinformatics (27): 1190-1191 (2011). Web SearchBibTeXDownload
22Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Natalia V. Roberts, Alan Ruttenberg, Barry Smith, Jian Zhang, Cathy H. Wu. ICBO 2011. Web SearchBibTeXDownload
21The Protein Ontology: a structured representation of protein forms and complexes. Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang, Cathy H. Wu. Nucleic Acids Research (39): 539-545 (2011). Web SearchBibTeXDownload
2010
20Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data. Chuming Chen, Peter B. McGarvey, Hongzhan Huang, Cathy H. Wu. Adv. Bioinformatics (2010) (2010). Web SearchBibTeXDownload
2008
19An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data. C. Zhang, Oswald Crasta, S. Cammer, Rebecca Will, Ron Kenyon, Dan Sullivan, Q. Yu, W. Sun, R. Jha, D. Liu, Tian Xue, Y. Zhang, M. Moore, Peter B. McGarvey, Hongzhan Huang, Yongxing Chen, J. Zhang, Raja Mazumder, Cathy H. Wu, Bruno W. S. Sobral. Nucleic Acids Research (36): 884-891 (2008). Web SearchBibTeXDownload
2007
18UniRef: comprehensive and non-redundant UniProt reference clusters. Baris E. Suzek, Hongzhan Huang, Peter B. McGarvey, Raja Mazumder, Cathy H. Wu. Bioinformatics (23): 1282-1288 (2007). Web SearchBibTeXDownload
2006
17The Universal Protein Resource (UniProt): an expanding universe of protein information. Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek. Nucleic Acids Research (34): 187-191 (2006). Web SearchBibTeXDownload
2005
16The Universal Protein Resource (UniProt). Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh. Nucleic Acids Research (33): 154-159 (2005). Web SearchBibTeXDownload
2004
15The iProClass integrated database for protein functional analysis. Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker. Computational Biology and Chemistry (28): 87-96 (2004). Web SearchBibTeXDownload
14The PIR integrated protein databases and data retrieval system. Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu. Data Science Journal (3): 163-174 (2004). Web SearchBibTeXDownload
13PIRSF: family classification system at the Protein Information Resource. Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker. Nucleic Acids Research (32): 112-114 (2004). Web SearchBibTeXDownload
12UniProt: the Universal Protein knowledgebase. Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh. Nucleic Acids Research (32): 115-119 (2004). Web SearchBibTeXDownload
2003
11Protein family classification and functional annotation. Cathy H. Wu, Hongzhan Huang, Lai-Su L. Yeh, Winona C. Barker. Computational Biology and Chemistry (27): 37-47 (2003). Web SearchBibTeXDownload
10iProClass: an integrated database of protein family, function and structure information. Hongzhan Huang, Winona C. Barker, Yongxing Chen, Cathy H. Wu. Nucleic Acids Research (31): 390-392 (2003). Web SearchBibTeXDownload
9The Protein Information Resource. Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C. R. Vinayaka, Jian Zhang, Winona C. Barker. Nucleic Acids Research (31): 345-347 (2003). Web SearchBibTeXDownload
2002
8The Protein Information Resource: an integrated public resource of functional annotation of proteins. Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker. Nucleic Acids Research (30): 35-37 (2002). Web SearchBibTeXDownload
2001
7Protein Information Resource: a community resource for expert annotation of protein data. Winona C. Barker, John S. Garavelli, Zhenglin Hou, Hongzhan Huang, Robert S. Ledley, Peter B. McGarvey, Hans-Werner Mewes, Bruce C. Orcutt, Friedhelm Pfeiffer, Akira Tsugita, C. R. Vinayaka, Chunlin Xiao, Lai-Su L. Yeh, Cathy H. Wu. Nucleic Acids Research (29): 29-32 (2001). Web SearchBibTeXDownload
6iProClass: an integrated, comprehensive and annotated protein classification database. Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, Winona C. Barker. Nucleic Acids Research (29): 52-54 (2001). Web SearchBibTeXDownload
2000
5PIR: a new resource for bioinformatics. Peter B. McGarvey, Hongzhan Huang, Winona C. Barker, Bruce C. Orcutt, John S. Garavelli, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Chunlin Xiao, Cathy H. Wu. Bioinformatics (16): 290-291 (2000). Web SearchBibTeXDownload
4The Protein Information Resource (PIR). Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu. Nucleic Acids Research (28): 41-44 (2000). Web SearchBibTeXDownload
3ProClass protein family database. Hongzhan Huang, Chunlin Xiao, Cathy H. Wu. Nucleic Acids Research (28): 273-276 (2000). Web SearchBibTeXDownload
1999
2Gene Family Identification Network Design for Protein Sequence Analysis. Cathy H. Wu, Hongzhan Huang, Jerry McLarty. International Journal on Artificial Intelligence Tools (8): 419-432 (1999). Web SearchBibTeX
1ProClass Protein Family Database. Cathy H. Wu, Sailaja Shivakumar, Hongzhan Huang. Nucleic Acids Research (27): 272-274 (1999). Web SearchBibTeXDownload
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