| 2011 |
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| 50 | Bayesian Classifiers for Chemical Toxicity Prediction. Meenakshi Mishra, Brian Potetz, Jun Huan. BIBM 2011, 595-599. Web SearchBibTeXDownload |
| 49 | Content based social behavior prediction: a multi-task learning approach. Hongliang Fei, Ruoyi Jiang, Yuhao Yang, Bo Luo, Jun Huan. CIKM 2011, 995-1000. Web SearchBibTeXDownload |
| 48 | Knowledge transfer with low-quality data: A feature extraction issue. Brian Quanz, Jun Huan, Meenakshi Mishra. ICDE 2011, 769-779. Web SearchBibTeXDownload |
| 47 | Structured Feature Selection and Task Relationship Inference for Multi-task Learning. Hongliang Fei, Jun Huan. ICDM 2011, 171-180. Web SearchBibTeXDownload |
| 46 | Guest Editorial: Special Focus on Bioinformatics and Systems Biology. Fang-Xiang Wu, Jun Huan. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 292-293 (2011). Web SearchBibTeXDownload |
| 45 | Anomaly localization for network data streams with graph joint sparse PCA. Ruoyi Jiang, Hongliang Fei, Jun Huan. KDD 2011, 886-894. Web SearchBibTeXDownload |
| 44 | An efficient graph-mining method for complicated and noisy data with real-world applications. Yi Jia, Jintao Zhang, Jun Huan. Knowl. Inf. Syst. (28): 423-447 (2011). Web SearchBibTeXDownload |
| 2010 |
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| 43 | Exploratory analysis of the BioAssay Network with implications to therapeutic discovery. Jintao Zhang, Gerald H. Lushington, Jun Huan. BIBM 2010, 569-572. Web SearchBibTeXDownload |
| 42 | Computational prediction of toxicity. Meenakshi Mishra, Hongliang Fei, Jun Huan. BIBM 2010, 686-691. Web SearchBibTeXDownload |
| 41 | Application of kernel functions for accurate similarity search in large chemical databases. Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald H. Lushington. BMC Bioinformatics (11): 8 (2010). Web SearchBibTeXDownload |
| 40 | Regularization and feature selection for networked features. Hongliang Fei, Brian Quanz, Jun Huan. CIKM 2010, 1893-1896. Web SearchBibTeXDownload |
| 39 | Knowledge Discovery in Academic Drug Discovery Programs: Opportunities and Challenges. Jun Huan. ICDM 2010, 1218. Web SearchBibTeXDownload |
| 38 | GPD: A Graph Pattern Diffusion Kernel for Accurate Graph Classification with Applications in Cheminformatics. Aaron M. Smalter, Jun Huan, Yi Jia, Gerald H. Lushington. IEEE/ACM Trans. Comput. Biology Bioinform. (7): 197-207 (2010). Web SearchBibTeXDownload |
| 37 | Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifs. Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. IEEE Transactions on Information Technology in Biomedicine (14): 1137-1143 (2010). Web SearchBibTeXDownload |
| 36 | Novel biological network features discovery for in silico identification of drug targets. Jintao Zhang, Jun Huan. IHI 2010, 144-152. Web SearchBibTeXDownload |
| 35 | Towards site-based protein functional annotations. Seak Fei Lei, Jun Huan. IJDMB (4): 452-470 (2010). Web SearchBibTeXDownload |
| 34 | Boosting with structure information in the functional space: an application to graph classification. Hongliang Fei, Jun Huan. KDD 2010, 643-652. Web SearchBibTeXDownload |
| 2009 |
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| 33 | The Analysis of Arabidopsis thaliana Circadian Network Based on Non-stationary DBNs Approach with Flexible Time Lag Choosing Mechanism. Yi Jia, Jun Huan. BIBM 2009, 178-181. Web SearchBibTeXDownload |
| 32 | Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases. Xiaohong Wang, Jun Huan, Aaron M. Smalter, Gerald H. Lushington. BIBM 2009, 356-361. Web SearchBibTeXDownload |
| 31 | Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity. Yi Jia, Jun Huan, Vincent Buhr, Jintao Zhang, Leonidas N. Carayannopoulos. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload |
| 30 | Large margin transductive transfer learning. Brian Quanz, Jun Huan. CIKM 2009, 1327-1336. Web SearchBibTeXDownload |
| 29 | L2 norm regularized feature kernel regression for graph data. Hongliang Fei, Jun Huan. CIKM 2009, 593-600. Web SearchBibTeXDownload |
| 28 | G-hash: towards fast kernel-based similarity search in large graph databases. Xiaohong Wang, Aaron M. Smalter, Jun Huan, Gerald H. Lushington. EDBT 2009, 472-480. Web SearchBibTeXDownload |
| 27 | Frequent Graph Patterns. Jun Huan. Encyclopedia of Database Systems 2009, 1170-1175. Web SearchBibTeXDownload |
| 26 | Anomaly Detection with Sensor Data for Distributed Security. Brian Quanz, Hongliang Fei, Jun Huan, Joseph B. Evans, Victor Frost, Gary J. Minden, Daniel D. Deavours, Leon Searl, Daniel DePardo, Martin Kuehnhausen, Daniel Fokum, Matt Zeets, Angela Oguna. ICCCN 2009, 1-6. Web SearchBibTeXDownload |
| 25 | Feature Selection in the Tensor Product Feature Space. Aaron M. Smalter, Jun Huan, Gerald H. Lushington. ICDM 2009, 1004-1009. Web SearchBibTeXDownload |
| 24 | GLSVM: Integrating Structured Feature Selection and Large Margin Classification. Hongliang Fei, Brian Quanz, Jun Huan. ICDM Workshops 2009, 362-367. Web SearchBibTeXDownload |
| 23 | Graph Wavelet Alignment Kernels for Drug Virtual Screening. Aaron M. Smalter, Jun Huan, Gerald H. Lushington. J. Bioinformatics and Computational Biology (7): 473-497 (2009). Cited by 2Web SearchBibTeXDownload |
| 22 | Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications. Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. Journal of Computer-Aided Molecular Design (23): 785-797 (2009). Web SearchBibTeXDownload |
| 21 | Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development. Deepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. Journal of Computer-Aided Molecular Design (23): 773-784 (2009). Web SearchBibTeXDownload |
| 20 | Aligned Graph Classification with Regularized Logistic Regression. Brian Quanz, Jun Huan. SDM 2009, 353-364. Web SearchBibTeXDownload |
| 2008 |
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| 19 | Chemical Compound Classification with Automatically Mined Structure Patterns. Aaron M. Smalter, Jun Huan, Gerald H. Lushington. APBC 2008, 39-48. Web SearchBibTeXDownload |
| 18 | GPM: A graph pattern matching kernel with diffusion for chemical compound classification. Aaron M. Smalter, Jun Huan, Gerald H. Lushington. BIBE 2008, 1-6. Cited by 1Web SearchBibTeXDownload |
| 17 | Structure feature selection for chemical compound classification. Hongliang Fei, Jun Huan. BIBE 2008, 1-6. Web SearchBibTeXDownload |
| 16 | Towards Site-Based Protein Functional Annotations. Seak Fei Lei, Jun Huan. BIBM 2008, 193-198. Web SearchBibTeXDownload |
| 15 | Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs. Deepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. BIBM 2008, 199-206. Web SearchBibTeXDownload |
| 14 | Structure feature selection for graph classification. Hongliang Fei, Jun Huan. CIKM 2008, 991-1000. Cited by 1Web SearchBibTeXDownload |
| 13 | Biological pathways as features for microarray data classification. Brian Quanz, Meeyoung Park, Jun Huan. DTMBIO 2008, 5-12. Web SearchBibTeXDownload |
| 2007 |
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| 12 | Graph Database Indexing Using Structured Graph Decomposition. David W. Williams, Jun Huan, Wei Wang. ICDE 2007, 976-985. Cited by 30Web SearchBibTeXDownload |
| 11 | On Demand Phenotype Ranking through Subspace Clustering. Xiang Zhang, Wei Wang, Jun Huan. SDM 2007. Web SearchBibTeXDownload |
| 10 | Mining RNA Tertiary Motifs with Structure Graphs. Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang. SSDBM 2007, 31. Cited by 2Web SearchBibTeXDownload |
| 2006 |
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| 9 | Local Structure Comparison of Proteins. Jun Huan, Jan Prins, Wei Wang. Advances in Computers (68): 180-255 (2006). Web SearchBibTeXDownload |
| 8 | UTS: An Unbalanced Tree Search Benchmark. Stephen Olivier, Jun Huan, Jinze Liu, Jan Prins, James Dinan, P. Sadayappan, Chau-Wen Tseng. LCPC 2006, 235-250. Cited by 5Web SearchBibTeXDownload |
| 2005 |
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| 7 | Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing Motifs. Jun Huan, Deepak Bandyopadhyay, Wei Wang, Jack Snoeyink, Jan Prins, Alexander Tropsha. Journal of Computational Biology (12): 657-671 (2005). Cited by 28Web SearchBibTeXDownload |
| 2004 |
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| 6 | SPIN: mining maximal frequent subgraphs from graph databases. Jun Huan, Wei Wang, Jan Prins, Jiong Yang. KDD 2004, 581-586. Cited by 95Web SearchBibTeXDownload |
| 5 | Accurate Classification of Protein Structural Families Using Coherent Subgraph Analysis. Jun Huan, Wei Wang, Anglina Washington, Jan Prins, Ruchir Shah, Alexander Tropsha. Pacific Symposium on Biocomputing 2004, 411-422. Cited by 39Web SearchBibTeXDownload |
| 4 | Mining protein family specific residue packing patterns from protein structure graphs. Jun Huan, Wei Wang, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha. RECOMB 2004, 308-315. Web SearchBibTeXDownload |
| 2003 |
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| 3 | Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss. Jun Huan, Jan Prins, Wei Wang, Todd J. Vision. CSB 2003, 484-485. Cited by 1Web SearchBibTeXDownload |
| 2 | Efficient Mining of Frequent Subgraphs in the Presence of Isomorphism. Jun Huan, Wei Wang, Jan Prins. ICDM 2003, 549-552. Cited by 219Web SearchBibTeXDownload |
| 1 | Evaluating the Impact of Programming Language Features on the Performance of Parallel Applications on Cluster Architectures. Konstantin Berlin, Jun Huan, Mary Jacob, Garima Kochhar, Jan Prins, William Pugh, P. Sadayappan, Jaime Spacco, Chau-Wen Tseng. LCPC 2003, 194-208. Cited by 25Web SearchBibTeXDownload |
