| 2011 |
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| 24 | Dataflow detection and applications to workflow scheduling. Yang Wang, Paul Lu. Concurrency and Computation: Practice and Experience (23): 1261-1283 (2011). Web SearchBibTeXDownload |
| 2010 |
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| 23 | PROSESS: a protein structure evaluation suite and server. Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart. Nucleic Acids Research (38): 633-640 (2010). Web SearchBibTeXDownload |
| 2009 |
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| 22 | Predicting homologous signaling pathways using machine learning. Babak Bostan, Russell Greiner, Duane Szafron, Paul Lu. Bioinformatics (25): 2913-2920 (2009). Web SearchBibTeXDownload |
| 21 | GeNMR: a web server for rapid NMR-based protein structure determination. Mark V. Berjanskii, Peter Tang, Jack Liang, Joseph A. Cruz, Jianjun Zhou, You Zhou, Edward Bassett, Cam Macdonell, Paul Lu, Guohui Lin, David S. Wishart. Nucleic Acids Research (37): 670-677 (2009). Web SearchBibTeXDownload |
| 2008 |
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| 20 | Improving subcellular localization prediction using text classification and the gene ontology. Alona Fyshe, Yifeng Liu, Duane Szafron, Russell Greiner, Paul Lu. Bioinformatics (24): 2512-2517 (2008). Web SearchBibTeXDownload |
| 2006 |
|---|
| 19 | Visual Explanation of Evidence with Additive Classifiers. Brett Poulin, Roman Eisner, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Cam Macdonell, John Anvik. AAAI 2006. Web SearchBibTeX |
| 18 | FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment. Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane Szafron, Kevin Charter, Ian Parsons. Algorithmica (45): 337-375 (2006). Web SearchBibTeXDownload |
| 17 | The Path-A metabolic pathway prediction web server. Luca Pireddu, Duane Szafron, Paul Lu, Russell Greiner. Nucleic Acids Research (34): 714-719 (2006). Web SearchBibTeXDownload |
| 2005 |
|---|
| 16 | The Proteome Analyst Suite of Automated Function Prediction Tools. Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Roman Eisner, Alona Fyshe, Brandon Pearcy, Luca Pireddu. AAAI 2005, 1698-1699. Web SearchBibTeX |
| 15 | Pathway Analyst--Automated Metabolic Pathway Prediction. Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart. CIBCB 2005, 243-250. Web SearchBibTeX |
| 14 | Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology. Roman Eisner, Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner. CIBCB 2005, 354-363. Web SearchBibTeX |
| 13 | PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization. Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart, Alona Fyshe, Brandon Pearcy, Brett Poulin, Roman Eisner, Danny Ngo, Nicholas Lamb. Nucleic Acids Research (33): 147-153 (2005). Web SearchBibTeXDownload |
| 12 | BASys: a web server for automated bacterial genome annotation. Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart. Nucleic Acids Research (33): 455-459 (2005). Web SearchBibTeXDownload |
| 11 | Using Dataflow Information to Improve Inter-Workflow Instance Concurrency. Yang Wang, Paul Lu. PDCAT 2005, 1078-1082. Web SearchBibTeXDownload |
| 2004 |
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| 10 | Predicting subcellular localization of proteins using machine-learned classifiers. Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner. Bioinformatics (20): 547-556 (2004). Web SearchBibTeXDownload |
| 9 | The Trellis Security Infrastructure: A Layered Approach to Overlay Metacomputers . Morgan Kan, Danny Ngo, Mark Lee, Paul Lu, Nolan Bard, Michael Closson, Meng Ding, Mark Goldberg, Nicholas Lamb, Yang Wang, Ron Senda, Edmund Sumbar. HPCS 2004, 109-117. Web SearchBibTeX |
| 8 | Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis. Nucleic Acids Research (32): 365-371 (2004). Web SearchBibTeX |
| 2003 |
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| 7 | FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment. Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane Szafron, Kevin Charter, Ian Parsons. ICPP 2003, 48. Web SearchBibTeXDownload |
| 2002 |
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| 6 | Memory-Efficient A* Heuristics for Multiple Sequence Alignment. Matthew McNaughton, Paul Lu, Jonathan Schaeffer, Duane Szafron. AAAI/IAAI 2002, 737-743. Web SearchBibTeX |
| 2001 |
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| 5 | Multi-Dispatch in the Java Virtual Machine: Design and Implementation. Christopher Dutchyn, Paul Lu, Duane Szafron, Steven Bromling, Wade Holst. COOTS 2001, 77-92. Web SearchBibTeXDownload |
| 4 | Fast Parallel Association Rule Mining without Candidacy Generation. Osmar R. Zaļane, Mohammad El-Hajj, Paul Lu. ICDM 2001, 665-668. Web SearchBibTeXDownload |
| 1993 |
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| 3 | On the Versatility of Parallel Sorting by Regular Sampling. Xiaobo Li, Paul Lu, Jonathan Schaeffer, John Shillington, Pok Sze Wong, Hanmao Shi. Parallel Computing (19): 1079-1103 (1993). Web SearchBibTeXDownload |
| 1992 |
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| 2 | A World Championship Caliber Checkers Program. Jonathan Schaeffer, Joseph C. Culberson, Norman Treloar, Brent Knight, Paul Lu, Duane Szafron. Artif. Intell. (53): 273-289 (1992). Web SearchBibTeXDownload |
| 1 | The Enterprise Distributed Programming Model. Duane Szafron, Jonathan Schaeffer, Pok Sze Wong, Enoch Chan, Paul Lu, Carol Smith. Programming Environments for Parallel Computing 1992, 67-76. Web SearchBibTeX |
