| 2010 |
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| 13 | Sparsification of RNA structure prediction including pseudoknots. Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp. Algorithms for Molecular Biology (5): 39 (2010). Web SearchBibTeXDownload |
| 12 | Fast prediction of RNA-RNA interaction. Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp. Algorithms for Molecular Biology (5): 5 (2010). Web SearchBibTeXDownload |
| 11 | Inferring cancer subnetwork markers using density-constrained biclustering. Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester. Bioinformatics (26) (2010). Web SearchBibTeXDownload |
| 10 | Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp. Journal of Computational Biology (17): 1-20 (2010). Web SearchBibTeXDownload |
| 9 | Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets. Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp. Journal of Computational Biology (17): 669-684 (2010). Web SearchBibTeXDownload |
| 8 | Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen. RECOMB 2010, 473-490. Web SearchBibTeXDownload |
| 7 | Sparsification of RNA Structure Prediction Including Pseudoknots. Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp. WABI 2010, 40-51. Web SearchBibTeXDownload |
| 6 | Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp. WABI 2010, 350-361. Web SearchBibTeXDownload |
| 2009 |
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| 5 | A partition function algorithm for interacting nucleic acid strands. Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen. Bioinformatics (25) (2009). Web SearchBibTeXDownload |
| 4 | The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov. Journal of Computational Biology (16): 159-167 (2009). Web SearchBibTeXDownload |
| 3 | Fast Prediction of RNA-RNA Interaction. Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp. WABI 2009, 261-272. Web SearchBibTeXDownload |
| 2008 |
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| 2 | The Relation between Indel Length and Functional Divergence: A Formal Study. Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp. WABI 2008, 330-341. Web SearchBibTeXDownload |
| 2007 |
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| 1 | taveRNA: a web suite for RNA algorithms and applications. Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp. Nucleic Acids Research (35): 325-329 (2007). Web SearchBibTeXDownload |
