2010
13Sparsification of RNA structure prediction including pseudoknots. Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp. Algorithms for Molecular Biology (5): 39 (2010). Web SearchBibTeXDownload
12Fast prediction of RNA-RNA interaction. Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp. Algorithms for Molecular Biology (5): 5 (2010). Web SearchBibTeXDownload
11Inferring cancer subnetwork markers using density-constrained biclustering. Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester. Bioinformatics (26) (2010). Web SearchBibTeXDownload
10Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp. Journal of Computational Biology (17): 1-20 (2010). Web SearchBibTeXDownload
9Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets. Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp. Journal of Computational Biology (17): 669-684 (2010). Web SearchBibTeXDownload
8Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen. RECOMB 2010, 473-490. Web SearchBibTeXDownload
7Sparsification of RNA Structure Prediction Including Pseudoknots. Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp. WABI 2010, 40-51. Web SearchBibTeXDownload
6Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp. WABI 2010, 350-361. Web SearchBibTeXDownload
2009
5A partition function algorithm for interacting nucleic acid strands. Hamidreza Chitsaz, Raheleh Salari, Süleyman Cenk Sahinalp, Rolf Backofen. Bioinformatics (25) (2009). Web SearchBibTeXDownload
4The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov. Journal of Computational Biology (16): 159-167 (2009). Web SearchBibTeXDownload
3Fast Prediction of RNA-RNA Interaction. Raheleh Salari, Rolf Backofen, Süleyman Cenk Sahinalp. WABI 2009, 261-272. Web SearchBibTeXDownload
2008
2The Relation between Indel Length and Functional Divergence: A Formal Study. Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp. WABI 2008, 330-341. Web SearchBibTeXDownload
2007
1taveRNA: a web suite for RNA algorithms and applications. Cagri Aksay, Raheleh Salari, Emre Karakoç, Can Alkan, Süleyman Cenk Sahinalp. Nucleic Acids Research (35): 325-329 (2007). Web SearchBibTeXDownload
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