| 2011 |
|---|
| 50 | Model building and intelligent acquisition with application to protein subcellular location classification. Charles Jackson, Estelle Glory-Afshar, Robert F. Murphy, Jelena Kovacevic. Bioinformatics [ISMB/ECCB] (27): 1854-1859 (2011). Web SearchBibTeXDownload |
| 49 | Discriminative Motif Finding for Predicting Protein Subcellular Localization. Tien-ho Lin, Robert F. Murphy, Ziv Bar-Joseph. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 441-451 (2011). Web SearchBibTeXDownload |
| 48 | Determination of protein location diversity via analysis of immunohistochemical images from the Human Protein Atlas. Arvind Rao, Robert F. Murphy. ISBI 2011, 1727-1729. Web SearchBibTeXDownload |
| 47 | Automated estimation of microtubule model parameters from 3-D live cell microscopy images. Aabid Shariff, Robert F. Murphy, Gustavo K. Rohde. ISBI 2011, 1330-1333. Web SearchBibTeXDownload |
| 46 | Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs. Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy. RECOMB 2011, 204-221. Web SearchBibTeXDownload |
| 2010 |
|---|
| 45 | Automated analysis of protein subcellular location in time series images. Yanhua Hu, Elvira Osuna-Highley, Juchang Hua, Theodore Scott Nowicki, Robert Stolz, Camille McKayle, Robert F. Murphy. Bioinformatics (26): 1630-1636 (2010). Web SearchBibTeXDownload |
| 44 | Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing. Luís Pedro Coelho, Tao Peng, Robert F. Murphy. Bioinformatics [ISMB] (26): 7-12 (2010). Web SearchBibTeXDownload |
| 43 | A graphical model to determine the subcellular protein location in artificial tissues. Estelle Glory-Afshar, Elvira Osuna-Highley, Brian Granger, Robert F. Murphy. ISBI 2010, 1037-1040. Web SearchBibTeXDownload |
| 42 | Structured literature image finder: Parsing text and figures in biomedical literature. Amr Ahmed, Andrew Arnold, Luís Pedro Coelho, Joshua Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy. J. Web Sem. (8): 151-154 (2010). Web SearchBibTeXDownload |
| 2009 |
|---|
| 41 | Workshop summary: Automated interpretation and modelling of cell images. Robert F. Murphy, Chun-Nan Hsu, Loris Nanni. ICML 2009, 164. Web SearchBibTeXDownload |
| 40 | Intelligent Acquisition and Learning of Fluorescence Microscope Data Models. Charles Jackson, Robert F. Murphy, Jelena Kovacevic. IEEE Transactions on Image Processing (18): 2071-2084 (2009). Web SearchBibTeXDownload |
| 39 | Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms. Luís Pedro Coelho, Aabid Shariff, Robert F. Murphy. ISBI 2009, 518-521. Web SearchBibTeXDownload |
| 38 | Instance-Based Generative Biological Shape Modeling. Tao Peng, Wei Wang, Gustavo K. Rohde, Robert F. Murphy. ISBI 2009, 690-693. Web SearchBibTeXDownload |
| 37 | Automated Analysis of Human Protein Atlas Immunofluorescence Images. Justin Newberg, Jieyue Li, Arvind Rao, Fredrik Ponten, Mathias Uhlen, Emma Lundberg, Robert F. Murphy. ISBI 2009, 1023-1026. Web SearchBibTeXDownload |
| 36 | Structured correspondence topic models for mining captioned figures in biological literature. Amr Ahmed, Eric P. Xing, William W. Cohen, Robert F. Murphy. KDD 2009, 39-48. Web SearchBibTeXDownload |
| 2008 |
|---|
| 35 | Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models. Yuntao Qian, Robert F. Murphy. Bioinformatics (24): 569-576 (2008). Web SearchBibTeXDownload |
| 34 | Identifying Subcellular Locations from Images of Unknown Resolution. Luís Pedro Coelho, Robert F. Murphy. BIRD 2008, 235-242. Web SearchBibTeXDownload |
| 33 | Automated proteome-wide determination of subcellular location using high throughput microscopy. Robert F. Murphy. ISBI 2008, 308-311. Web SearchBibTeXDownload |
| 32 | Automated comparison of protein subcellular location patterns between images of normal and cancerous tissues. Estelle Glory, Justin Newberg, Robert F. Murphy. ISBI 2008, 304-307. Web SearchBibTeXDownload |
| 31 | Deformation-based nonlinear dimension reduction: Applications to nuclear morphometry. Gustavo K. Rohde, Wei Wang, Tao Peng, Robert F. Murphy. ISBI 2008, 500-503. Web SearchBibTeXDownload |
| 30 | Graphical Models for Structured Classification, with an Application to Interpreting Images of Protein Subcellular Location Patterns. Shann-Ching Chen, Geoffrey J. Gordon, Robert F. Murphy. Journal of Machine Learning Research (9): 651-682 (2008). Web SearchBibTeXDownload |
| 2007 |
|---|
| 29 | Interpretation of Protein Subcellular Location Patterns in 3D Images Across Cell Types and Resolutions. Xiang Chen, Robert F. Murphy. BIRD 2007, 328-342. Web SearchBibTeXDownload |
| 28 | A multiresolution approach to automated classification of protein subcellular location images. Amina Chebira, Yann Barbotin, Charles Jackson, Thomas E. Merryman, Gowri Srinivasa, Robert F. Murphy, Jelena Kovacevic. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload |
| 27 | Efficient Acquisition and Learning of Fluorescence Microscope Data Models. Charles Jackson, Robert F. Murphy, Jelena Kovacevic. ICIP (6) 2007, 245-248. Web SearchBibTeXDownload |
| 26 | Identifying Fluorescence Microscope Images in Online Journal Articles Using Both Image and Text Features. Juchang Hua, Orhan N. Ayasli, William W. Cohen, Robert F. Murphy. ISBI 2007, 1224-1227. Web SearchBibTeXDownload |
| 25 | Systematic Description of Subcellular Location for Integration with Proteomics Databases and Systems Biology Modeling. Robert F. Murphy. ISBI 2007, 1052-1055. Web SearchBibTeXDownload |
| 24 | Automated image analysis of protein localization in budding yeast. Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy. ISMB/ECCB (Supplement of Bioinformatics) 2007, 66-71. Web SearchBibTeXDownload |
| 23 | A Stacked Graphical Model for Associating Sub-Images with Sub-Captions. Zhenzhen Kou, William W. Cohen, Robert F. Murphy. Pacific Symposium on Biocomputing 2007, 257-268. Web SearchBibTeXDownload |
| 2006 |
|---|
| 22 | A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images. Shann-Ching Chen, Robert F. Murphy. BMC Bioinformatics (7): 90 (2006). Web SearchBibTeXDownload |
| 21 | A Novel Graphical Model Approach to Segmenting Cell Images. Shann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy. CIBCB 2006, 1-8. Web SearchBibTeXDownload |
| 20 | Improved comparison of protein subcellular location patterns. Ting Zhao, Stalia Soto, Robert F. Murphy. ISBI 2006, 562-565. Web SearchBibTeXDownload |
| 19 | Topology preserving STACS segmentation of protein subcellular location images. Lionel Coulot, Heather Kirschner, Amina Chebira, José M. F. Moura, Jelena Kovacevic, Elvira Garcia Osuna, Robert F. Murphy. ISBI 2006, 566-569. Web SearchBibTeXDownload |
| 18 | Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images. Yanhua Hu, Jesus Carmona, Robert F. Murphy. ISBI 2006, 1028-1031. Web SearchBibTeXDownload |
| 17 | A novel approximate inference approach to automated classification of protein subcellular location patterns in multi-cell images. Shann-Ching Chen, Geoffrey J. Gordon, Robert F. Murphy. ISBI 2006, 558-561. Web SearchBibTeXDownload |
| 2005 |
|---|
| 16 | Data Mining Methods for a Systematics of Protein Subcellular Location. Kai Huang, Robert F. Murphy. Data Mining in Bioinformatics 2005, 143-187. Web SearchBibTeX |
| 15 | Object Type Recognition for Automated Analysis of Protein Subcellular Location. Ting Zhao, Meel Velliste, Michael V. Boland, Robert F. Murphy. IEEE Transactions on Image Processing (14): 1351-1359 (2005). Web SearchBibTeXDownload |
| 14 | High-recall protein entity recognition using a dictionary. Zhenzhen Kou, William W. Cohen, Robert F. Murphy. ISMB (Supplement of Bioinformatics) 2005, 266-273. Web SearchBibTeXDownload |
| 13 | Research issues in protein location image databases. Robert F. Murphy, Christos Faloutsos. SIGMOD Conference 2005, 966-967. Cited by 2Web SearchBibTeXDownload |
| 2004 |
|---|
| 12 | Boosting accuracy of automated classification of fluorescence microscope images for location proteomics. Kai Huang, Robert F. Murphy. BMC Bioinformatics (5): 78 (2004). Web SearchBibTeXDownload |
| 11 | Automated Interpretation of Subcellular Location Patterns. Robert F. Murphy. ISBI 2004, 53-56. Web SearchBibTeX |
| 10 | Automated Classification of Subcellular Patterns In Multicell Images Without Segmentation Into Single Cells. Kai Huang, Robert F. Murphy. ISBI 2004, 1139-1142. Web SearchBibTeX |
| 9 | A Distributed Database for BioMolecular Images. A. K. Singh, B. S. Manjunath, Robert F. Murphy. SIGMOD Record (33): 65-71 (2004). Web SearchBibTeXDownload |
| 2003 |
|---|
| 8 | Extracting information from text and images for location proteomics. Zhenzhen Kou, William W. Cohen, Robert F. Murphy. BIOKDD 2003, 2-9. Web SearchBibTeXDownload |
| 7 | Understanding captions in biomedical publications. William W. Cohen, Richard C. Wang, Robert F. Murphy. KDD 2003, 499-504. Web SearchBibTeXDownload |
| 6 | Robust Numerical Features for Description and Classification of Subcellular Location Patterns in Fluorescence Microscope Images. Robert F. Murphy, Meel Velliste, Gregory Porreca. VLSI Signal Processing (35): 311-321 (2003). Web SearchBibTeXDownload |
| 2002 |
|---|
| 5 | Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database. Kai Huang, Jennifer Lin, James A. Gajnak, Robert F. Murphy. ISBI 2002, 325-328. Web SearchBibTeXDownload |
| 4 | Automated determination of protein subcellular locations from 3D fluorescence microscope images. Meel Velliste, Robert F. Murphy. ISBI 2002, 867-870. Web SearchBibTeXDownload |
| 2001 |
|---|
| 3 | Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns. Robert F. Murphy, Meel Velliste, Jie Yao, Gregory Porreca. BIBE 2001, 119-128. Web SearchBibTeX |
| 2 | A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of HeLa cells. Michael V. Boland, Robert F. Murphy. Bioinformatics (17): 1213-1223 (2001). Web SearchBibTeXDownload |
| 2000 |
|---|
| 1 | Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope Images. Robert F. Murphy, Michael V. Boland, Meel Velliste. ISMB 2000, 251-259. Web SearchBibTeX |
