| 2007 |
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| 9 | Terminator Detection by Support Vector Machine Utilizing a Stochastic Context-Free Grammar. Patricia Francis-Lyon, Nello Cristianini, Stephen R. Holbrook. CIBCB 2007, 170-177. Web SearchBibTeXDownload |
| 2006 |
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| 8 | PSoL: a positive sample only learning algorithm for finding non-coding RNA genes. Chunlin Wang, Chris H. Q. Ding, Richard F. Meraz, Stephen R. Holbrook. Bioinformatics (22): 2590-2596 (2006). Web SearchBibTeXDownload |
| 7 | Biclustering Protein Complex Interactions with a Biclique Finding Algorithm. Chris H. Q. Ding, Ya Zhang, Tao Li, Stephen R. Holbrook. ICDM 2006, 178-187. Web SearchBibTeXDownload |
| 6 | Transitive closure and metric inequality of weighted graphs: detecting protein interaction modules using cliques. Chris H. Q. Ding, Xiaofeng He, Hui Xiong, Hanchuan Peng, Stephen R. Holbrook. IJDMB (1): 162-177 (2006). Web SearchBibTeXDownload |
| 5 | MeRNA: a database of metal ion binding sites in RNA structures. Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, Stephen R. Holbrook. Nucleic Acids Research (34): 131-134 (2006). Web SearchBibTeXDownload |
| 2005 |
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| 4 | Comparative mapping of sequence-based and structure-based protein domains. Ya Zhang, John-Marc Chandonia, Chris H. Q. Ding, Stephen R. Holbrook. BMC Bioinformatics (6): 77 (2005). Web SearchBibTeXDownload |
| 3 | Identification of Functional Modules in Protein Complexes via Hyperclique Pattern Discovery. Hui Xiong, Xiaofeng He, Chris H. Q. Ding, Ya Zhang, Vipin Kumar, Stephen R. Holbrook. Pacific Symposium on Biocomputing 2005. Web SearchBibTeXDownload |
| 2004 |
|---|
| 2 | Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. Richard F. Meraz, Xiaofeng He, Chris H. Q. Ding, Stephen R. Holbrook. CSB 2004, 535-538. Web SearchBibTeXDownload |
| 1 | Contraction Graphs for Representation and Analysis of RNA Secondary Structure. Chris H. Q. Ding, Richard F. Meraz, Xiaofeng He, Stephen R. Holbrook. CSB 2004, 716-717. Web SearchBibTeXDownload |
