| 2011 |
|---|
| 47 | RINQ: Reference-based Indexing for Network Queries. Günhan Gülsoy, Tamer Kahveci. Bioinformatics [ISMB/ECCB] (27): 149-158 (2011). Web SearchBibTeXDownload |
| 46 | Identifying differentially regulated genes. Nirmalya Bandyopadhyay, Manas Somaiya, Sanjay Ranka, Tamer Kahveci. ICCABS 2011, 19-25. Web SearchBibTeXDownload |
| 45 | Manipulating the Steady State of Metabolic Pathways. Bin Song, I. Esra Buyuktahtakin, Sanjay Ranka, Tamer Kahveci. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 732-747 (2011). Web SearchBibTeXDownload |
| 44 | TRIAL: A Tool for Finding Distant Structural Similarities. Jayendra Venkateswaran, Bin Song, Tamer Kahveci, Chris Jermaine. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 819-831 (2011). Web SearchBibTeXDownload |
| 2010 |
|---|
| 43 | RepFrag: a graph based method for finding repeats and transposons from fragmented genomes. Nirmalya Bandyopadhyay, A. Mark Settles, Tamer Kahveci. BCB 2010, 92-101. Web SearchBibTeXDownload |
| 42 | Enzymatic target identification with dynamic states. Bin Song, Sanjay Ranka, Tamer Kahveci. BCB 2010, 180-187. Web SearchBibTeXDownload |
| 41 | Functional similarities of reaction sets in metabolic pathways. Ferhat Ay, Tamer Kahveci. BCB 2010, 102-111. Web SearchBibTeXDownload |
| 40 | Finding Dynamic Modules of Biological Regulatory Networks. Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahveci. BIBE 2010, 136-143. Web SearchBibTeXDownload |
| 39 | Surrogate ranking for very expensive similarity queries. Fei Xu, Ravi Jampani, Mingxi Wu, Chris Jermaine, Tamer Kahveci. ICDE 2010, 848-859. Web SearchBibTeXDownload |
| 38 | SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings. Ferhat Ay, Tamer Kahveci. RECOMB 2010, 15-30. Web SearchBibTeXDownload |
| 2009 |
|---|
| 37 | Pathway-Based Feature Selection Algorithm for Cancer Microarray Data. Nirmalya Bandyopadhyay, Tamer Kahveci, Steve Goodison, Yijun Sun, Sanjay Ranka. Adv. Bioinformatics (2009) (2009). Web SearchBibTeXDownload |
| 36 | Inferring progression models for CGH data. Jun Liu, Nirmalya Bandyopadhyay, Sanjay Ranka, Michael Baudis, Tamer Kahveci. Bioinformatics (25): 2208-2215 (2009). Web SearchBibTeXDownload |
| 35 | Index Structures for Biological Sequences. Tamer Kahveci. Encyclopedia of Database Systems 2009, 1428-1432. Web SearchBibTeXDownload |
| 34 | Double iterative optimisation for metabolic network-based drug target identification. Bin Song, Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka. IJDMB (3): 124-144 (2009). Web SearchBibTeXDownload |
| 33 | A Fast and Accurate Algorithm for Comparative Analysis of metabolic Pathways. Ferhat Ay, Tamer Kahveci, Valérie de Crécy-Lagard. J. Bioinformatics and Computational Biology (7): 389-428 (2009). Web SearchBibTeXDownload |
| 2008 |
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| 32 | A novel genome-scale repeat finder geared towards transposons. Xuehui Li, Tamer Kahveci, A. Mark Settles. Bioinformatics (24): 468-476 (2008). Web SearchBibTeXDownload |
| 31 | Classification and feature selection algorithms for multi-class CGH data. Jun Liu, Sanjay Ranka, Tamer Kahveci. ISMB 2008, 86-95. Web SearchBibTeXDownload |
| 30 | Mining Metabolic Networks for Optimal Drug Targets. Padmavati Sridhar, Bin Song, Tamer Kahveci, Sanjay Ranka. Pacific Symposium on Biocomputing 2008, 291-302. Web SearchBibTeXDownload |
| 29 | Reference-based indexing for metric spaces with costly distance measures. Jayendra Venkateswaran, Tamer Kahveci, Christopher M. Jermaine, Deepak Lachwani. VLDB J. (17): 1231-1251 (2008). Cited by 1Web SearchBibTeXDownload |
| 2007 |
|---|
| 28 | QOMA2: Optimizing the alignment of many sequences. Xu Zhang, Tamer Kahveci. BIBE 2007, 780-787. Web SearchBibTeXDownload |
| 27 | Quality-Based Similarity Search for Biological Sequence Databases. Xuehui Li, Tamer Kahveci. BIOCOMP 2007, 567-573. Web SearchBibTeX |
| 26 | Markers improve clustering of CGH data. Jun Liu, Sanjay Ranka, Tamer Kahveci. Bioinformatics (23): 450-457 (2007). Web SearchBibTeXDownload |
| 25 | QOMA: quasi-optimal multiple alignment of protein sequences. Xu Zhang, Tamer Kahveci. Bioinformatics (23): 162-168 (2007). Web SearchBibTeXDownload |
| 24 | An Iterative Algorithm for Metabolic Network-Based Drug Target Identification. Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka. Pacific Symposium on Biocomputing 2007, 88-99. Web SearchBibTeXDownload |
| 2006 |
|---|
| 23 | A Novel algorithm for identifying low-complexity regions in a protein sequence. Xuehui Li, Tamer Kahveci. Bioinformatics (22): 2980-2987 (2006). Web SearchBibTeXDownload |
| 22 | Distance-based clustering of CGH data. Jun Liu, Jaaved Mohammed, James Carter, Sanjay Ranka, Tamer Kahveci, Michael Baudis. Bioinformatics (22): 1971-1978 (2006). Web SearchBibTeXDownload |
| 21 | Finding Data Broadness Via Generalized Nearest Neighbors. Jayendra Venkateswaran, Tamer Kahveci, Orhan Çamoglu. EDBT 2006, 645-663. Web SearchBibTeXDownload |
| 20 | A New Approach for Alignment of Multiple Proteins. Xu Zhang, Tamer Kahveci. Pacific Symposium on Biocomputing 2006, 339-350. Web SearchBibTeXDownload |
| 19 | Reference-based Indexing of Sequence Databases. Jayendra Venkateswaran, Deepak Lachwani, Tamer Kahveci, Christopher M. Jermaine. VLDB 2006, 906-917. Cited by 13Web SearchBibTeXDownload |
| 2005 |
|---|
| 18 | Highly Scalable and Accurate Seeds for Subsequence Alignment. Abhijit Pol, Tamer Kahveci. BIBE 2005, 27-31. Web SearchBibTeXDownload |
| 17 | Approximate Global Alignment of Sequences. Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao, Tao Li. BIBE 2005, 81-88. Web SearchBibTeXDownload |
| 16 | Workload Characterization of Bioinformatics Applications. Yue Li, Tao Li, Tamer Kahveci, José A. B. Fortes. MASCOTS 2005, 15-22. Web SearchBibTeXDownload |
| 2004 |
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| 15 | Speeding up whole-genome alignment by indexing frequency vectors. Tamer Kahveci, Vebjorn Ljosa, Ambuj K. Singh. Bioinformatics (20): 2122-2134 (2004). Web SearchBibTeXDownload |
| 14 | Progressive Searching of Biological Sequences. Tamer Kahveci, Ambuj K. Singh. IEEE Data Eng. Bull. (27): 32-39 (2004). Web SearchBibTeX |
| 13 | Optimizing Similarity Search for Arbitrary Length Time Series Queries. Tamer Kahveci, Ambuj K. Singh. IEEE Trans. Knowl. Data Eng. (16): 418-433 (2004). Web SearchBibTeXDownload |
| 12 | Index-based Similarity Search for Protein Structure Databases. Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh. J. Bioinformatics and Computational Biology (2): 99-126 (2004). Web SearchBibTeXDownload |
| 11 | ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure. Arnab Bhattacharya, Tolga Can, Tamer Kahveci, Ambuj K. Singh, Yuan-Fang Wang. Pacific Symposium on Biocomputing 2004, 264-275. Web SearchBibTeXDownload |
| 2003 |
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| 10 | Towards Index-based Similarity Search for Protein Structure Databases. Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh. CSB 2003, 148-158. Web SearchBibTeXDownload |
| 9 | Genome on Demand: Interactive Substring Searching. Tamer Kahveci, Ambuj K. Singh. CSB 2003, 551-552. Web SearchBibTeXDownload |
| 8 | Joining Massive High-Dimensional Datasets. Tamer Kahveci, Christian A. Lang, Ambuj K. Singh. ICDE 2003, 265-276. Web SearchBibTeXDownload |
| 7 | Fast alignment of large genome databases. Tamer Kahveci, Ambuj K. Singh. ICDE 2003, 768-770. Web SearchBibTeXDownload |
| 6 | PSI: indexing protein structures for fast similarity search. Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh. ISMB (Supplement of Bioinformatics) 2003, 81-83. Web SearchBibTeXDownload |
| 5 | MAP: Searching Large Genome Databases. Tamer Kahveci, Ambuj K. Singh. Pacific Symposium on Biocomputing 2003, 303-314. Web SearchBibTeXDownload |
| 2002 |
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| 4 | An Efficient Index Structure for Shift and Scale Invariant Search of Multi-Attribute Time Sequences. Tamer Kahveci, Ambuj K. Singh, Aliekber Gürel. ICDE 2002, 266. Web SearchBibTeXDownload |
| 3 | Similarity Searching for Multi-Attribute Sequences. Tamer Kahveci, Ambuj K. Singh, Aliekber Gürel. SSDBM 2002, 175. Web SearchBibTeXDownload |
| 2001 |
|---|
| 2 | Variable Length Queries for Time Series Data. Tamer Kahveci, Ambuj K. Singh. ICDE 2001, 273-282. Web SearchBibTeXDownload |
| 1 | Efficient Index Structures for String Databases. Tamer Kahveci, Ambuj K. Singh. VLDB 2001, 351-360. Web SearchBibTeXDownload |
