Tatsuya Akutsu

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2012
43Singleton and 2-periodic attractors of sign-definite Boolean networks. Tatsuya Akutsu, Avraham A. Melkman, Takeyuki Tamura. Inf. Process. Lett. (112): 35-38 (2012). Web SearchBibTeXDownload
2011
42An Improved Clique-Based Method for Computing Edit Distance between Unordered Trees and Its Application to Comparison of Glycan Structures. Tatsuya Akutsu, Tomoya Mori, Takeyuki Tamura, Daiji Fukagawa, Atsuhiro Takasu, Etsuji Tomita. CISIS 2011, 536-540. Web SearchBibTeXDownload
41Bioinformatic Approaches for Predicting substrates of Proteases. Jiangning Song, Hao Tan, Sarah E. Boyd, Hongbin Shen, Khalid Mahmood, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock, Robert N. Pike. J. Bioinformatics and Computational Biology (9): 149-178 (2011). Web SearchBibTeXDownload
40Exact algorithms for computing the tree edit distance between unordered trees. Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu, Takeyuki Tamura. Theor. Comput. Sci. (412): 352-364 (2011). Web SearchBibTeXDownload
2010
39Approximating Tree Edit Distance through String Edit Distance. Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu. Algorithmica (57): 325-348 (2010). Web SearchBibTeXDownload
38Cascleave: towards more accurate prediction of caspase substrate cleavage sites. Jiangning Song, Hao Tan, Hongbin Shen, Khalid Mahmood, Sarah E. Boyd, Geoffrey I. Webb, Tatsuya Akutsu, James C. Whisstock. Bioinformatics (26): 752-760 (2010). Web SearchBibTeXDownload
37A Variational Bayesian EM Algorithm for Tree Similarity. Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu. ICPR 2010, 1056-1059. Web SearchBibTeXDownload
36Determining a singleton attractor of an AND/OR Boolean network in O(1.587n) time. Avraham A. Melkman, Takeyuki Tamura, Tatsuya Akutsu. Inf. Process. Lett. (110): 565-569 (2010). Web SearchBibTeXDownload
2009
35Latent Topic Extraction from Relational Table for Record Matching. Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu. Discovery Science 2009, 449-456. Web SearchBibTeXDownload
34A grammatical approach to RNA-RNA interaction prediction. Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki. Pattern Recognition (42): 531-538 (2009). Web SearchBibTeXDownload
33Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees. Daiji Fukagawa, Tatsuya Akutsu, Atsuhiro Takasu. SPIRE 2009, 7-17. Web SearchBibTeXDownload
2008
32Improved approximation of the largest common subtree of two unordered trees of bounded height. Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu. Inf. Process. Lett. (109): 165-170 (2008). Web SearchBibTeXDownload
31Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach. Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki. PRIB 2008, 66-77. Web SearchBibTeXDownload
2007
30An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks. Wai-Ki Ching, Shuqin Zhang, Michael K. Ng, Tatsuya Akutsu. Bioinformatics (23): 1511-1518 (2007). Web SearchBibTeXDownload
29Statistical Learning Algorithm for Tree Similarity. Atsuhiro Takasu, Daiji Fukagawa, Tatsuya Akutsu. ICDM 2007, 667-672. Web SearchBibTeXDownload
28Simulation study in Probabilistic Boolean Network models for genetic regulatory networks. Shuqin Zhang, Wai-Ki Ching, Michael K. Ng, Tatsuya Akutsu. IJDMB (1): 217-240 (2007). Web SearchBibTeXDownload
2006
27On the Complexity of Finding Control Strategies for Boolean Networks. Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng. APBC 2006, 99-108. Cited by 3Web SearchBibTeXDownload
26Optimizing amino acid substitution matrices with a local alignment kernel. Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu. BMC Bioinformatics (7): 246 (2006). Web SearchBibTeXDownload
25Approximating Tree Edit Distance Through String Edit Distance. Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu. ISAAC 2006, 90-99. Web SearchBibTeXDownload
24Identification of metabolic units induced by environmental signals. Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu. ISMB (Supplement of Bioinformatics) 2006, 375-383. Web SearchBibTeXDownload
23A Control Model for Markovian Genetic Regulatory Networks. Michael K. Ng, Shuqin Zhang, Wai-Ki Ching, Tatsuya Akutsu. T. Comp. Sys. Biology 2006, 36-48. Web SearchBibTeXDownload
2005
22Fast and accurate database homology search using upper bounds of local alignment scores. Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa. Bioinformatics (21): 912-921 (2005). Web SearchBibTeXDownload
21A score matrix to reveal the hidden links in glycans. Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa. Bioinformatics (21): 1457-1463 (2005). Web SearchBibTeXDownload
20A linear control model for gene intervention in a genetic regulatory network. Shuqin Zhang, Michael K. Ng, Wai-Ki Ching, Tatsuya Akutsu. GrC 2005, 354-358. Web SearchBibTeXDownload
19A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains. Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka. IEEE Trans. Knowl. Data Eng. (17): 1051-1064 (2005). Web SearchBibTeXDownload
18On construction of stochastic genetic networks based on gene expression sequences. Wai-Ki Ching, Michael K. Ng, Eric S. Fung, Tatsuya Akutsu. Int. J. Neural Syst. (15): 297-310 (2005). Web SearchBibTeXDownload
17Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines. Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert. Journal of Chemical Information and Modeling (45): 939-951 (2005). Web SearchBibTeXDownload
2004
16Protein homology detection using string alignment kernels. Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu. Bioinformatics (20): 1682-1689 (2004). Web SearchBibTeXDownload
15Clustering under the line graph transformation: application to reaction network. Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu. BMC Bioinformatics (5): 207 (2004). Web SearchBibTeXDownload
14Extensions of marginalized graph kernels. Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert. ICML 2004. Web SearchBibTeXDownload
13Application of a new probabilistic model for recognizing complex patterns in glycans. Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka. ISMB/ECCB (Supplement of Bioinformatics) 2004, 6-14. Web SearchBibTeXDownload
12KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains. Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa. Nucleic Acids Research (32): 267-272 (2004). Web SearchBibTeX
11Managing and Analyzing Carbohydrate Data. Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka. SIGMOD Record (33): 33-38 (2004). Web SearchBibTeXDownload
2003
10Inferring strengths of protein-protein interactions from experimental data using linear programming. Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu. ECCB 2003, 58-65. Web SearchBibTeX
2000
9On approximation algorithms for local multiple alignment. Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono. RECOMB 2000, 1-7. Web SearchBibTeXDownload
1998
8Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets. Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama. Discrete & Computational Geometry (20): 307-331 (1998). Web SearchBibTeXDownload
1997
7Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets. Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama. Symposium on Computational Geometry 1997, 314-323. Web SearchBibTeXDownload
1996
6Sampling Effectiveness in Discovering Functional Relationships in Databases. Atsuhiro Takasu, Tatsuya Akutsu, Moonis Ali. IEA/AIE 1996, 455-460. Web SearchBibTeX
1994
5On PAC Learnability of Functional Depencies. Tatsuya Akutsu, Atsuhiro Takasu. New Generation Comput. (12): 359-374 (1994). Web SearchBibTeXDownload
1993
4Knowledge-based system for computer-aided drug design. Einoshin Suzuki, Tatsuya Akutsu, Setsuo Ohsuga. Knowl.-Based Syst. (6): 114-126 (1993). Web SearchBibTeXDownload
1992
3On PAC Learnability of Functional Dependencies. Tatsuya Akutsu, Atsuhiro Takasu. ALT 1992, 229-239. Web SearchBibTeXDownload
1991
2Logic-based approach to expert systems in chemistry. Tatsuya Akutsu, Einoshin Suzuki, Setsuo Ohsuga. Knowl.-Based Syst. (4): 103-116 (1991). Web SearchBibTeXDownload
1988
1CHEMILOG - A Logic Programming Language/System for Chemical Information Processing. Tatsuya Akutsu, Setsuo Ohsuga. FGCS 1988, 1176-1183. Web SearchBibTeX
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