DBLife: Vasant Honavar

2011
149	Verifying Intervention Policies to Counter Infection Propagation over Networks: A Model Checking Approach. Ganesh Ram Santhanam, Yuly Suvorov, Samik Basu, Vasant Honavar. AAAI 2011. Web SearchBibTeXDownload
148	HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods. Li C. Xue, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (12): 244 (2011). Web SearchBibTeXDownload
147	Abstraction Super-structuring Normal Forms: Towards a Theory of Structural Induction. Adrian Silvescu, Vasant Honavar. CoRR (abs/1107.0434) (2011). Web SearchBibTeXDownload
146	Predicting MHC-II Binding Affinity Using Multiple Instance Regression. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 1067-1079 (2011). Web SearchBibTeXDownload
145	On the Utility of Curricula in Unsupervised Learning of Probabilistic Grammars. Kewei Tu, Vasant Honavar. IJCAI 2011, 1523-1528. Web SearchBibTeXDownload
144	Learning Relational Bayesian Classifiers from RDF Data. Harris T. Lin, Neeraj Koul, Vasant Honavar. International Semantic Web Conference (1) 2011, 389-404. Web SearchBibTeXDownload
143	Representing and Reasoning with Qualitative Preferences for Compositional Systems. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. J. Artif. Intell. Res. (JAIR) (42): 211-274 (2011). Web SearchBibTeXDownload
142	PRIDB: a protein-RNA interface database. Benjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (39): 277-282 (2011). Web SearchBibTeXDownload
141	Exemplar-based Robust Coherent Biclustering. Kewei Tu, Xixiu Ouyang, Dingyi Han, Vasant Honavar. SDM 2011, 884-895. Web SearchBibTeXDownload
2010
140	Dominance Testing via Model Checking. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. AAAI 2010. Web SearchBibTeXDownload
139	Semi-supervised sequence classification using abstraction augmented Markov models. Cornelia Caragea, Adrian Silvescu, Doina Caragea, Vasant Honavar. BCB 2010, 257-264. Web SearchBibTeXDownload
138	A framework for developing epitope prediction tools. Yasser El-Manzalawy, Vasant Honavar. BCB 2010, 660-662. Web SearchBibTeXDownload
137	Scalable, updatable predictive models for sequence data. Neeraj Koul, Ngot Bui, Vasant Honavar. BIBM 2010, 681-685. Web SearchBibTeXDownload
136	Detection of gene orthology from gene co-expression and protein interaction networks. Fadi Towfic, Susan VanderPlas, Casey A. Oliver, Oliver Couture, Christopher K. Tuggle, M. Heather West Greenlee, Vasant Honavar. BMC Bioinformatics (11): 7 (2010). Web SearchBibTeXDownload
135	Abstraction Augmented Markov Models. Cornelia Caragea, Adrian Silvescu, Doina Caragea, Vasant Honavar. ICDM 2010, 68-77. Web SearchBibTeXDownload
134	Ontology-guided Extraction of Complex Nested Relationships. Sushain Pandit, Vasant Honavar. ICTAI (2) 2010, 173-178. Web SearchBibTeXDownload
133	Struct-NB: predicting protein-RNA binding sites using structural features. Fadi Towfic, Cornelia Caragea, David C. Gemperline, Drena Dobbs, Vasant Honavar. IJDMB (4): 21-43 (2010). Web SearchBibTeXDownload
132	Automata-Based Verification of Security Requirements of Composite Web Services. Hongyu Sun, Samik Basu, Vasant Honavar, Robyn R. Lutz. ISSRE 2010, 348-357. Web SearchBibTeXDownload
131	Efficient Dominance Testing for Unconditional Preferences. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. KR 2010. Web SearchBibTeXDownload
130	Identifying and Eliminating Inconsistencies in Mappings across Hierarchical Ontologies. Bhavesh Sanghvi, Neeraj Koul, Vasant Honavar. OTM Conferences (2) 2010, 999-1008. Web SearchBibTeXDownload
129	Secrecy-Preserving Query Answering for Instance Checking in EL\\mathcal{EL}. Jia Tao, Giora Slutzki, Vasant Honavar. RR 2010, 195-203. Web SearchBibTeXDownload
128	Learning in Presence of Ontology Mapping Errors. Neeraj Koul, Vasant Honavar. Web Intelligence 2010, 291-296. Web SearchBibTeXDownload
127	Failure Analysis for Composition of Web Services Represented as Labeled Transition Systems. Dinanath Nadkarni, Samik Basu, Vasant Honavar, Robyn R. Lutz. WS-FM 2010, 161-175. Web SearchBibTeXDownload
2009
126	Detection of Gene Orthology Based on Protein-Protein Interaction Networks. Fadi Towfic, M. Heather West Greenlee, Vasant Honavar. BIBM 2009, 48-53. Web SearchBibTeXDownload
125	Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload
124	MICCLLR: Multiple-Instance Learning Using Class Conditional Log Likelihood Ratio. Yasser El-Manzalawy, Vasant Honavar. Discovery Science 2009, 80-91. Web SearchBibTeXDownload
123	Machine Learning in Computational Biology. Cornelia Caragea, Vasant Honavar. Encyclopedia of Database Systems 2009, 1663-1667. Web SearchBibTeXDownload
122	Knowledge Acquisition from Semantically Heterogeneous Data. Doina Caragea, Vasant Honavar. Encyclopedia of Data Warehousing and Mining 2009, 1110-1116. Web SearchBibTeXDownload
121	Combining Super-Structuring and Abstraction on Sequence Classification. Adrian Silvescu, Cornelia Caragea, Vasant Honavar. ICDM 2009, 986-991. Web SearchBibTeXDownload
120	Design and Implementation of a Query Planner for Data Integration. Neeraj Koul, Vasant Honavar. ICTAI 2009, 214-218. Web SearchBibTeXDownload
119	Learning Link-Based Classifiers from Ontology-Extended Textual Data. Cornelia Caragea, Doina Caragea, Vasant Honavar. ICTAI 2009, 354-361. Web SearchBibTeXDownload
118	Web Service Substitution Based on Preferences Over Non-functional Attributes. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. IEEE SCC 2009, 210-217. Web SearchBibTeXDownload
117	Efficient Markov Network Structure Discovery Using Independence Tests. Facundo Bromberg, Dimitris Margaritis, Vasant Honavar. J. Artif. Intell. Res. (JAIR) (35): 449-484 (2009). Web SearchBibTeXDownload
116	Package-Based Description Logics. Jie Bao, George Voutsadakis, Giora Slutzki, Vasant Honavar. Modular Ontologies 2009, 349-371. Web SearchBibTeXDownload
115	Learning Link-Based Naïve Bayes Classifiers from Ontology-Extended Distributed Data. Cornelia Caragea, Doina Caragea, Vasant Honavar. OTM Conferences (2) 2009, 1139-1146. Web SearchBibTeXDownload
114	Multi-Modal Hierarchical Dirichlet Process Model for Predicting Image Annotation and Image-Object Label Correspondence. Oksana Yakhnenko, Vasant Honavar. SDM 2009, 281-294. Web SearchBibTeXDownload
113	Aligning Biomolecular Networks Using Modular Graph Kernels. Fadi Towfic, M. Heather West Greenlee, Vasant Honavar. WABI 2009, 345-361. Web SearchBibTeXDownload
2008
112	On the Decidability of Role Mappings between Modular Ontologies. Jie Bao, George Voutsadakis, Giora Slutzki, Vasant Honavar. AAAI 2008, 400-405. Web SearchBibTeX
111	Using Global Sequence Similarity to Enhance Biological Sequence Labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BIBM 2008, 104-111. Web SearchBibTeXDownload
110	Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. BIBM 2008, 289-292. Web SearchBibTeXDownload
109	Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable. Myron Peto, Andrzej Kloczkowski, Vasant Honavar, Robert L. Jernigan. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload
108	Complexes of on-line self assembly. Neeraj Koul, Jim Lathrop, Jack H. Lutz, Vasant Honavar. EIT 2008, 448-452. Web SearchBibTeXDownload
107	Unsupervised Learning of Probabilistic Context-Free Grammar using Iterative Biclustering. Kewei Tu, Vasant Honavar. ICGI 2008, 224-237. Web SearchBibTeXDownload
106	TCP-Compose* - A TCP-Net Based Algorithm for Efficient Composition of Web Services Using Qualitative Preferences. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. ICSOC 2008, 453-467. Web SearchBibTeXDownload
105	Attribute Value Taxonomy Generation through Matrix Based Adaptive Genetic Algorithm. Hyunsung Jo, Yong-chan Na, Byonghwa Oh, Jihoon Yang, Vasant Honavar. ICTAI (1) 2008, 393-400. Web SearchBibTeXDownload
104	Composing Web Services through Automatic Reformulation of Service Specifications. Jyotishman Pathak, Samik Basu, Vasant Honavar. IEEE SCC (1) 2008, 361-369. Web SearchBibTeXDownload
103	MOSCOE: an Approach for Composing Web Services through Iterative Reformulation of Functional Specifications. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. International Journal on Artificial Intelligence Tools (17): 109-138 (2008). Web SearchBibTeXDownload
102	Striking Similarities in Diverse Telomerase Proteins Revealed by Combining Structure Prediction and Machine Learning Approaches. Jae-Hyung Lee, Michael Hamilton, Colin Gleeson, Cornelia Caragea, Peter Zaback, Jeffry D. Sander, Li C. Xue, Feihong Wu, Michael Terribilini, Vasant Honavar, Drena Dobbs. Pacific Symposium on Biocomputing 2008, 501-512. Web SearchBibTeXDownload
101	On Utilizing Qualitative Preferences in Web Service Composition: A CP-net Based Approach. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. SERVICES I 2008, 538-544. Web SearchBibTeXDownload
100	Visual Methods for Examining SVM Classifiers. Doina Caragea, Dianne Cook, Hadley Wickham, Vasant Honavar. Visual Data Mining 2008, 136-153. Web SearchBibTeXDownload
99	Learning Classifiers from Large Databases Using Statistical Queries. Neeraj Koul, Cornelia Caragea, Vasant Honavar, Vikas Bahirwani, Doina Caragea. Web Intelligence 2008, 923-926. Web SearchBibTeXDownload
98	Federated ALCI: Preliminary Report. George Voutsadakis, Giora Slutzki, Vasant Honavar, Jie Bao. Web Intelligence 2008, 575-578. Web SearchBibTeXDownload
2007
97	A Semantic Importing Approach to Knowledge Reuse from Multiple Ontologies. Jie Bao, Giora Slutzki, Vasant Honavar. AAAI 2007, 1304-1309. Web SearchBibTeX
96	Reports on the 2006 AAAI Fall Symposia. Joshua Clifford Bongard, Derek P. Brock, Samuel G. Collins, Ramani Duraiswami, Tim Finin, Ian Harrison, Vasant Honavar, Gregory S. Hornby, Ari Jonsson, Mike Kassoff, David Kortenkamp, Sanjeev Kumar, Ken Murray, Alexander I. Rudnicky, Goran Trajkovski. AI Magazine (28): 88-92 (2007). Web SearchBibTeXDownload
95	Assessing the Performance of Macromolecular Sequence Classifiers. Cornelia Caragea, Jivko Sinapov, Vasant Honavar, Drena Dobbs. BIBE 2007, 320-326. Web SearchBibTeXDownload
94	Analysis of Protein Protein Dimeric Interfaces. Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honavar. BIBM 2007, 35. Web SearchBibTeXDownload
93	Glycosylation site prediction using ensembles of Support Vector Machine classifiers. Cornelia Caragea, Jivko Sinapov, Adrian Silvescu, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload
92	Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. Carson M. Andorf, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload
91	Assembling Composite Web Services from Autonomous Components. Jyotishman Pathak, Samik Basu, Vasant Honavar. Emerging Artificial Intelligence Applications in Computer Engineering 2007, 394-405. Web SearchBibTeX
90	On Context-Specific Substitutability of Web Services. Jyotishman Pathak, Samik Basu, Vasant Honavar. ICWS 2007, 192-199. Web SearchBibTeXDownload
89	Integrated Decision Algorithms for Auto-steered Electric Transmission System Asset Management. James D. McCalley, Vasant Honavar, Sarah M. Ryan, William Q. Meeker, Daji Qiao, Ronald A. Roberts, Yuan Li, Jyotishman Pathak, Mujing Ye, Yili Hong. International Conference on Computational Science (1) 2007, 1066-1073. Web SearchBibTeXDownload
88	RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Michael Terribilini, Jeffry D. Sander, Jae-Hyung Lee, Peter Zaback, Robert L. Jernigan, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (35): 578-584 (2007). Web SearchBibTeXDownload
87	Privacy-Preserving Reasoning on the SemanticWeb. Jie Bao, Giora Slutzki, Vasant Honavar. Web Intelligence 2007, 791-797. Web SearchBibTeXDownload
2006
86	Experimental Comparison of Feature Subset Selection Using GA and ACO Algorithm. Keunjoon Lee, Jinu Joo, Jihoon Yang, Vasant Honavar. ADMA 2006, 465-472. Web SearchBibTeXDownload
85	Modular Ontologies - A Formal Investigation of Semantics and Expressivity. Jie Bao, Doina Caragea, Vasant Honavar. ASWC 2006, 616-631. Web SearchBibTeXDownload
84	Predicting DNA-binding sites of proteins from amino acid sequence. Changhui Yan, Michael Terribilini, Feihong Wu, Robert L. Jernigan, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (7): 262 (2006). Web SearchBibTeXDownload
83	Learning Classifiers from Distributed, Ontology-Extended Data Sources. Doina Caragea, Jun Zhang, Jyotishman Pathak, Vasant Honavar. DaWaK 2006, 363-373. Web SearchBibTeXDownload
82	A Tool for Collaborative Construction of Large Biological Ontologies. Jie Bao, Zhiliang Hu, Doina Caragea, James Reecy, Vasant Honavar. DEXA Workshops 2006, 191-195. Web SearchBibTeXDownload
81	Parallel Web Service Composition in MoSCoE: A Choreography-Based Approach. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ECOWS 2006, 3-12. Web SearchBibTeXDownload
80	Condition Data Aggregation with Application to Failure Rate Calculation of Power Transformers. Jyotishman Pathak, Yong Jiang, Vasant Honavar, James D. McCalley. HICSS 2006. Web SearchBibTeXDownload
79	MoSCoE: A Framework for Modeling Web Service Composition and Execution. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ICDE Workshops 2006, 143. Web SearchBibTeXDownload
78	Modeling Web Services by Iterative Reformulation of Functional and Non-functional Requirements. Jyotishman Pathak, Samik Basu, Vasant Honavar. ICSOC 2006, 314-326. Web SearchBibTeXDownload
77	A Service-Oriented Architecture for Electric Power Transmission System Asset Management. Jyotishman Pathak, Yuan Li, Vasant Honavar, James D. McCalley. ICSOC Workshops 2006, 26-37. Web SearchBibTeXDownload
76	Selecting and Composing Web Services through Iterative Reformulation of Functional Specifications. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ICTAI 2006, 445-454. Web SearchBibTeXDownload
75	Auto-steered Information-Decision Processes for Electric System Asset Management. James D. McCalley, Vasant Honavar, Sarah M. Ryan, William Q. Meeker, Ronald A. Roberts, Daji Qiao, Yuan Li. International Conference on Computational Science (3) 2006, 440-447. Web SearchBibTeXDownload
74	Package-Based Description Logics - Preliminary Results. Jie Bao, Doina Caragea, Vasant Honavar. International Semantic Web Conference 2006, 967-969. Web SearchBibTeXDownload
73	On the Semantics of Linking and Importing in Modular Ontologies. Jie Bao, Doina Caragea, Vasant Honavar. International Semantic Web Conference 2006, 72-86. Web SearchBibTeXDownload
72	Towards the automatic generation of mobile agents for distributed intrusion detection system. Yanxin Wang, Smruti Ranjan Behera, Johnny Wong, Guy G. Helmer, Vasant Honavar, Les Miller, Robyn R. Lutz, Mark Slagell. Journal of Systems and Software (79): 1-14 (2006). Web SearchBibTeXDownload
71	Learning accurate and concise naïve Bayes classifiers from attribute value taxonomies and data. Jun Zhang, Dae-Ki Kang, Adrian Silvescu, Vasant Honavar. Knowl. Inf. Syst. (9): 157-179 (2006). Web SearchBibTeXDownload
70	Adapt OWL as a Modular Ontology Language. Jie Bao, Vasant Honavar. OWLED 2006. Web SearchBibTeXDownload
69	TRIPPER: Rule Learning Using Taxonomies. Flavian Vasile, Adrian Silvescu, Dae-Ki Kang, Vasant Honavar. PAKDD 2006, 55-59. Web SearchBibTeXDownload
68	RNBL-MN: A Recursive Naive Bayes Learner for Sequence Classification. Dae-Ki Kang, Adrian Silvescu, Vasant Honavar. PAKDD 2006, 45-54. Web SearchBibTeXDownload
67	Efficient Markov Network Structure Discovery using Independence Tests. Facundo Bromberg, Dimitris Margaritis, Vasant Honavar. SDM 2006. Web SearchBibTeXDownload
66	A Tableau-Based Federated Reasoning Algorithm for Modular Ontologies. Jie Bao, Doina Caragea, Vasant Honavar. Web Intelligence 2006, 404-410. Web SearchBibTeXDownload
65	Divide and Conquer Semantic Web with Modular Ontologies - A Brief Review of Modular Ontology Language Formalisms. Jie Bao, Vasant Honavar. WoMO 2006. Web SearchBibTeXDownload
2005
64	Learning Support Vector Machines from Distributed Data Sources. Cornelia Caragea, Doina Caragea, Vasant Honavar. AAAI 2005, 1602-1603. Web SearchBibTeX
63	Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources. Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant Honavar. ALT 2005, 13-44. Web SearchBibTeXDownload
62	Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and Rna Binding Sites in Rev Proteins of Hiv-1 and Eiav Agree with Experimental Data. Michael Terribilini, Jae-Hyung Lee, Changhui Yan, Robert L. Jernigan, Susan Carpenter, Vasant Honavar, Drena Dobbs. CoRR (abs/cs/0511075) (2005). Web SearchBibTeXDownload
61	Information Integration from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DEXA Workshops 2005, 580-584. Web SearchBibTeXDownload
60	Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DILS 2005, 175-190. Web SearchBibTeXDownload
59	Learning Ontology-Aware Classifiers. Jun Zhang, Doina Caragea, Vasant Honavar. Discovery Science 2005, 308-321. Web SearchBibTeXDownload
58	Discriminatively Trained Markov Model for Sequence Classification. Oksana Yakhnenko, Adrian Silvescu, Vasant Honavar. ICDM 2005, 498-505. Web SearchBibTeXDownload
57	Learning Classifiers for Misuse Detection Using a Bag of System Calls Representation. Dae-Ki Kang, Doug Fuller, Vasant Honavar. ISI 2005, 511-516. Web SearchBibTeXDownload
56	Learning Classifiers Using Hierarchically Structured Class Taxonomies. Feihong Wu, Jun Zhang, Vasant Honavar. SARA 2005, 313-320. Web SearchBibTeXDownload
55	Multinomial Event Model Based Abstraction for Sequence and Text Classification. Dae-Ki Kang, Jun Zhang, Adrian Silvescu, Vasant Honavar. SARA 2005, 134-148. Web SearchBibTeXDownload
54	A framework for semantic web services discovery. Jyotishman Pathak, Neeraj Koul, Doina Caragea, Vasant Honavar. WIDM 2005, 45-50. Web SearchBibTeXDownload
2004
53	Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs. BMC Bioinformatics (5): 205 (2004). Web SearchBibTeXDownload
52	Learning Classifiers from Semantically Heterogeneous Data. Doina Caragea, Jyotishman Pathak, Vasant Honavar. CoopIS/DOA/ODBASE (2) 2004, 963-980. Web SearchBibTeXDownload
51	Generating AVTs Using GA for Learning Decision Tree Classifiers with Missing Data. Jinu Joo, Jun Zhang, Jihoon Yang, Vasant Honavar. Discovery Science 2004, 347-354. Web SearchBibTeXDownload
50	Generation of Attribute Value Taxonomies from Data for Data-Driven Construction of Accurate and Compact Classifiers. Dae-Ki Kang, Adrian Silvescu, Jun Zhang, Vasant Honavar. ICDM 2004, 130-137. Web SearchBibTeXDownload
49	AVT-NBL: An Algorithm for Learning Compact and Accurate Naïve Bayes Classifiers from Attribute Value Taxonomies and Data. Jun Zhang, Vasant Honavar. ICDM 2004, 289-296. Web SearchBibTeXDownload
48	Integration of Domain-Specific and Domain-Independent Ontologies for Colonoscopy Video Database Annotation. Jie Bao, Yu Cao, Wallapak Tavanapong, Vasant Honavar. IKE 2004, 82-90. Web SearchBibTeX
47	A Framework for Learning from Distributed Data Using Sufficient Statistics and Its Application to Learning Decision Trees. Doina Caragea, Adrian Silvescu, Vasant Honavar. Int. J. Hybrid Intell. Syst. (1): 80-89 (2004). Web SearchBibTeXDownload
46	A two-stage classifier for identification of protein-protein interface residues. Changhui Yan, Drena Dobbs, Vasant Honavar. ISMB/ECCB (Supplement of Bioinformatics) 2004, 371-378. Web SearchBibTeXDownload
45	Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach. Changhui Yan, Vasant Honavar, Drena Dobbs. Neural Computing and Applications (13): 123-129 (2004). Web SearchBibTeXDownload
44	Ontology-Extended Component-Based Workflows : A Framework for Constructing Complex Workflows from Semantically Heterogeneous Software Components. Jyotishman Pathak, Doina Caragea, Vasant Honavar. SWDB 2004, 41-56. Web SearchBibTeXDownload
2003
43	Towards Simple, Easy-to-Understand, yet Accurate Classifiers. Doina Caragea, Dianne Cook, Vasant Honavar. ICDM 2003, 497-500. Web SearchBibTeXDownload
42	Learning from Attribute Value Taxonomies and Partially Specified Instances. Jun Zhang, Vasant Honavar. ICML 2003, 880-887. Web SearchBibTeX
41	Statistics Gathering for Learning from Distributed, Heterogeneous and Autonomous Data Sources. Doina Caragea, Jaime Reinoso, Adrian Silvescu, Vasant Honavar. IIWeb 2003, 99-104. Web SearchBibTeXDownload
40	A Multi-relational Decision Tree Learning Algorithm - Implementation and Experiments. Anna Atramentov, Hector Leiva, Vasant Honavar. ILP 2003, 38-56. Web SearchBibTeXDownload
39	Automated data-driven discovery of motif-based protein function classifiers. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. Inf. Sci. (155): 1-18 (2003). Web SearchBibTeXDownload
38	Information Extraction and Integration from Heterogeneous, Distributed, Autonomous Information Sources : A Federated Ontology-Driven Query-Centric Approach. Jaime Reinoso, Adrian Silvescu, Doina Caragea, Jyotishman Pathak, Vasant Honavar. IRI 2003, 183-191. Web SearchBibTeX
37	Lightweight agents for intrusion detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller, Yanxin Wang. Journal of Systems and Software (67): 109-122 (2003). Web SearchBibTeXDownload
36	Learning Decision Trees form Distributed Heterogeneous Autonomous Data. Doina Caragea, Adrian Silvescu, Vasant Honavar. MAICS 2003, 10-17. Web SearchBibTeX
2002
35	Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences. Carson M. Andorf, Drena Dobbs, Vasant Honavar. JCIS 2002, 1200-1206. Web SearchBibTeX
34	Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. JCIS 2002, 1193-1199. Web SearchBibTeX
33	Automated discovery of concise predictive rules for intrusion detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller. Journal of Systems and Software (60): 165-175 (2002). Web SearchBibTeXDownload
32	A Software Fault Tree Approach to Requirements Analysis of an Intrusion Detection System. Guy G. Helmer, Johnny S. Wong, Mark Slagell, Vasant Honavar, Les Miller, Robyn R. Lutz. Requir. Eng. (7): 207-220 (2002). Web SearchBibTeXDownload
31	Ontology-Driven Induction of Decision Trees at Multiple Levels of Abstraction. Jun Zhang, Adrian Silvescu, Vasant Honavar. SARA 2002, 316-323. Web SearchBibTeXDownload
2001
30	Analysis and Synthesis of Agents That Learn from Distributed Dynamic Data Sources. Doina Caragea, Adrian Silvescu, Vasant Honavar. Emergent Neural Computational Architectures Based on Neuroscience 2001, 547-559. Web SearchBibTeXDownload
29	Learn++: an incremental learning algorithm for supervised neural networks. Robi Polikar, L. Upda, S. S. Upda, Vasant Honavar. IEEE Transactions on Systems, Man, and Cybernetics, Part C (31): 497-508 (2001). Web SearchBibTeXDownload
28	Autonomous agents for coordinated distributed parameterized heuristic routing in large dynamic communication networks. Armin R. Mikler, Vasant Honavar, Johnny S. Wong. Journal of Systems and Software (56): 231-246 (2001). Web SearchBibTeXDownload
27	SMART mobile agent facility. Johnny Wong, Guy G. Helmer, Venkatraman Naganathan, Sriniwas Polavarapu, Vasant Honavar, Les Miller. Journal of Systems and Software (56): 9-22 (2001). Web SearchBibTeXDownload
26	Gaining insights into support vector machine pattern classifiers using projection-based tour methods. Doina Caragea, Dianne Cook, Vasant Honavar. KDD 2001, 251-256. Web SearchBibTeXDownload
25	Learning DFA from Simple Examples. Rajesh Parekh, Vasant Honavar. Machine Learning (44): 9-35 (2001). Web SearchBibTeXDownload
2000
24	Incremental and Distributed Learning with Support Vector Machines. Doina Caragea, Adrian Silvescu, Vasant Honavar. AAAI/IAAI 2000, 1067. Web SearchBibTeX
23	On the Relationship between Models for Learning in Helpful Environments. Rajesh Parekh, Vasant Honavar. ICGI 2000, 207-220. Web SearchBibTeXDownload
22	Supporting organizational knowledge management with agents. Prashant Pai, Leslie L. Miller, Vasant Honavar, Johnny Wong, Sree Nilakanta. IRMA Conference 2000, 325-329. Web SearchBibTeX
21	A Negotiation Model in Agent-mediated Electronic Commerce. Mokdong Chug, Vasant Honavar. ISMSE 2000, 403-410. Web SearchBibTeXDownload
1999
20	Integration of cognitive systems across disciplinary boundaries. Ron Sun, Vasant Honavar, Gregg C. Oden. Cognitive Systems Research (1): 1-3 (1999). Web SearchBibTeXDownload
19	Feature Selection Using a Genetic Algorithm for Intrusion Detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller. GECCO 1999, 1781. Web SearchBibTeX
18	Simple DFA are Polynomially Probably Exactly Learnable from Simple Examples. Rajesh Parekh, Vasant Honavar. ICML 1999, 298-306. Web SearchBibTeX
17	Data-Driven Theory Refinement Using KBDistAl. Jihoon Yang, Rajesh Parekh, Vasant Honavar, Drena Dobbs. IDA 1999, 331-342. Web SearchBibTeXDownload
16	A neural-network architecture for syntax analysis. Chun-Hsien Chen, Vasant Honavar. IEEE Transactions on Neural Networks (10): 94-114 (1999). Web SearchBibTeXDownload
15	DistAl: An inter-pattern distance-based constructive learning algorithm. Jihoon Yang, Rajesh Parekh, Vasant Honavar. Intell. Data Anal. (3): 55-73 (1999). Web SearchBibTeXDownload
1998
14	A Polynominal Time Incremental Algorithm for Learning DFA. Rajesh Parekh, Codrin M. Nichitiu, Vasant Honavar. ICGI 1998, 37-49. Web SearchBibTeXDownload
13	Feature Subset Selection Using a Genetic Algorithm. Jihoon Yang, Vasant Honavar. IEEE Intelligent Systems (13): 44-49 (1998). Web SearchBibTeX
12	An object oriented approach to simulating large communication networks. Armin R. Mikler, Johnny S. K. Wong, Vasant Honavar. Journal of Systems and Software (40): 151-164 (1998). Web SearchBibTeXDownload
1997
11	Learning DFA from Simple Examples. Rajesh Parekh, Vasant Honavar. ALT 1997, 116-131. Web SearchBibTeXDownload
10	Quo Vadis - A Framework for Intelligent Routing in Large Communication Networks. Armin R. Mikler, Johnny S. Wong, Vasant Honavar. Journal of Systems and Software (37): 61-73 (1997). Web SearchBibTeX
1996
9	Analysis of Utility-Theoretic Heuristics for Intelligent Adaptive Network Routing. Armin R. Mikler, Vasant Honavar, Johnny S. Wong. AAAI/IAAI, Vol. 1 1996, 96-101. Web SearchBibTeX
8	An Incremental Interactive Algorithm for Regular Grammar Inference. Rajesh Parekh, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1397. Web SearchBibTeX
7	Experiments in Evolutionary Synthesis of Robotic Neurocontrollers. Karthik Balakrishnan, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1378. Web SearchBibTeX
6	Constructive Neural Network Learning Algorithms. Rajesh Parekh, Jihoon Yang, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1398. Web SearchBibTeX
5	An incremental interactive algorithm for grammar inference. Rajesh Parekh, Vasant Honavar. ICGI 1996, 238-249. Web SearchBibTeXDownload
1995
4	A Neural Architecture for Content as well as Address-based Storage and Recall: Theory and Applications. Chun-Hsien Chen, Vasant Honavar. Connect. Sci. (7): 281-300 (1995). Web SearchBibTeXDownload
1993
3	Generative learning structures and processes for generalized connectionist networks. Vasant Honavar, Leonard Uhr. Inf. Sci. (70): 75-108 (1993). Web SearchBibTeXDownload
1992
2	Neural Network Design and the Complexity of Learning (Book Review). Vasant Honavar. Machine Learning (9): 95-98 (1992). Web SearchBibTeXDownload
1989
1	Generation, Local Receptive Fields and Global Convergence Improve Perceptual Learning in Connectionist Networks. Vasant Honavar, Leonard Uhr. IJCAI 1989, 180-185. Web SearchBibTeX

2011

149

Verifying Intervention Policies to Counter Infection Propagation over Networks: A Model Checking Approach. Ganesh Ram Santhanam, Yuly Suvorov, Samik Basu, Vasant Honavar. AAAI 2011. Web SearchBibTeXDownload

148

HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods. Li C. Xue, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (12): 244 (2011). Web SearchBibTeXDownload

147

Abstraction Super-structuring Normal Forms: Towards a Theory of Structural Induction. Adrian Silvescu, Vasant Honavar. CoRR (abs/1107.0434) (2011). Web SearchBibTeXDownload

146

Predicting MHC-II Binding Affinity Using Multiple Instance Regression. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. IEEE/ACM Trans. Comput. Biology Bioinform. (8): 1067-1079 (2011). Web SearchBibTeXDownload

145

On the Utility of Curricula in Unsupervised Learning of Probabilistic Grammars. Kewei Tu, Vasant Honavar. IJCAI 2011, 1523-1528. Web SearchBibTeXDownload

144

Learning Relational Bayesian Classifiers from RDF Data. Harris T. Lin, Neeraj Koul, Vasant Honavar. International Semantic Web Conference (1) 2011, 389-404. Web SearchBibTeXDownload

143

Representing and Reasoning with Qualitative Preferences for Compositional Systems. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. J. Artif. Intell. Res. (JAIR) (42): 211-274 (2011). Web SearchBibTeXDownload

142

PRIDB: a protein-RNA interface database. Benjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (39): 277-282 (2011). Web SearchBibTeXDownload

141

Exemplar-based Robust Coherent Biclustering. Kewei Tu, Xixiu Ouyang, Dingyi Han, Vasant Honavar. SDM 2011, 884-895. Web SearchBibTeXDownload

2010

140

Dominance Testing via Model Checking. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. AAAI 2010. Web SearchBibTeXDownload

139

Semi-supervised sequence classification using abstraction augmented Markov models. Cornelia Caragea, Adrian Silvescu, Doina Caragea, Vasant Honavar. BCB 2010, 257-264. Web SearchBibTeXDownload

138

A framework for developing epitope prediction tools. Yasser El-Manzalawy, Vasant Honavar. BCB 2010, 660-662. Web SearchBibTeXDownload

137

Scalable, updatable predictive models for sequence data. Neeraj Koul, Ngot Bui, Vasant Honavar. BIBM 2010, 681-685. Web SearchBibTeXDownload

136

Detection of gene orthology from gene co-expression and protein interaction networks. Fadi Towfic, Susan VanderPlas, Casey A. Oliver, Oliver Couture, Christopher K. Tuggle, M. Heather West Greenlee, Vasant Honavar. BMC Bioinformatics (11): 7 (2010). Web SearchBibTeXDownload

135

Abstraction Augmented Markov Models. Cornelia Caragea, Adrian Silvescu, Doina Caragea, Vasant Honavar. ICDM 2010, 68-77. Web SearchBibTeXDownload

134

Ontology-guided Extraction of Complex Nested Relationships. Sushain Pandit, Vasant Honavar. ICTAI (2) 2010, 173-178. Web SearchBibTeXDownload

133

Struct-NB: predicting protein-RNA binding sites using structural features. Fadi Towfic, Cornelia Caragea, David C. Gemperline, Drena Dobbs, Vasant Honavar. IJDMB (4): 21-43 (2010). Web SearchBibTeXDownload

132

Automata-Based Verification of Security Requirements of Composite Web Services. Hongyu Sun, Samik Basu, Vasant Honavar, Robyn R. Lutz. ISSRE 2010, 348-357. Web SearchBibTeXDownload

131

Efficient Dominance Testing for Unconditional Preferences. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. KR 2010. Web SearchBibTeXDownload

130

Identifying and Eliminating Inconsistencies in Mappings across Hierarchical Ontologies. Bhavesh Sanghvi, Neeraj Koul, Vasant Honavar. OTM Conferences (2) 2010, 999-1008. Web SearchBibTeXDownload

129

Secrecy-Preserving Query Answering for Instance Checking in EL\\mathcal{EL}. Jia Tao, Giora Slutzki, Vasant Honavar. RR 2010, 195-203. Web SearchBibTeXDownload

128

Learning in Presence of Ontology Mapping Errors. Neeraj Koul, Vasant Honavar. Web Intelligence 2010, 291-296. Web SearchBibTeXDownload

127

Failure Analysis for Composition of Web Services Represented as Labeled Transition Systems. Dinanath Nadkarni, Samik Basu, Vasant Honavar, Robyn R. Lutz. WS-FM 2010, 161-175. Web SearchBibTeXDownload

2009

126

Detection of Gene Orthology Based on Protein-Protein Interaction Networks. Fadi Towfic, M. Heather West Greenlee, Vasant Honavar. BIBM 2009, 48-53. Web SearchBibTeXDownload

125

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload

124

MICCLLR: Multiple-Instance Learning Using Class Conditional Log Likelihood Ratio. Yasser El-Manzalawy, Vasant Honavar. Discovery Science 2009, 80-91. Web SearchBibTeXDownload

123

Machine Learning in Computational Biology. Cornelia Caragea, Vasant Honavar. Encyclopedia of Database Systems 2009, 1663-1667. Web SearchBibTeXDownload

122

Knowledge Acquisition from Semantically Heterogeneous Data. Doina Caragea, Vasant Honavar. Encyclopedia of Data Warehousing and Mining 2009, 1110-1116. Web SearchBibTeXDownload

121

Combining Super-Structuring and Abstraction on Sequence Classification. Adrian Silvescu, Cornelia Caragea, Vasant Honavar. ICDM 2009, 986-991. Web SearchBibTeXDownload

120

Design and Implementation of a Query Planner for Data Integration. Neeraj Koul, Vasant Honavar. ICTAI 2009, 214-218. Web SearchBibTeXDownload

119

Learning Link-Based Classifiers from Ontology-Extended Textual Data. Cornelia Caragea, Doina Caragea, Vasant Honavar. ICTAI 2009, 354-361. Web SearchBibTeXDownload

118

Web Service Substitution Based on Preferences Over Non-functional Attributes. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. IEEE SCC 2009, 210-217. Web SearchBibTeXDownload

117

Efficient Markov Network Structure Discovery Using Independence Tests. Facundo Bromberg, Dimitris Margaritis, Vasant Honavar. J. Artif. Intell. Res. (JAIR) (35): 449-484 (2009). Web SearchBibTeXDownload

116

Package-Based Description Logics. Jie Bao, George Voutsadakis, Giora Slutzki, Vasant Honavar. Modular Ontologies 2009, 349-371. Web SearchBibTeXDownload

115

Learning Link-Based Naïve Bayes Classifiers from Ontology-Extended Distributed Data. Cornelia Caragea, Doina Caragea, Vasant Honavar. OTM Conferences (2) 2009, 1139-1146. Web SearchBibTeXDownload

114

Multi-Modal Hierarchical Dirichlet Process Model for Predicting Image Annotation and Image-Object Label Correspondence. Oksana Yakhnenko, Vasant Honavar. SDM 2009, 281-294. Web SearchBibTeXDownload

113

Aligning Biomolecular Networks Using Modular Graph Kernels. Fadi Towfic, M. Heather West Greenlee, Vasant Honavar. WABI 2009, 345-361. Web SearchBibTeXDownload

2008

112

On the Decidability of Role Mappings between Modular Ontologies. Jie Bao, George Voutsadakis, Giora Slutzki, Vasant Honavar. AAAI 2008, 400-405. Web SearchBibTeX

111

Using Global Sequence Similarity to Enhance Biological Sequence Labeling. Cornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. BIBM 2008, 104-111. Web SearchBibTeXDownload

110

Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information. Yasser El-Manzalawy, Drena Dobbs, Vasant Honavar. BIBM 2008, 289-292. Web SearchBibTeXDownload

109

Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable. Myron Peto, Andrzej Kloczkowski, Vasant Honavar, Robert L. Jernigan. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload

108

Complexes of on-line self assembly. Neeraj Koul, Jim Lathrop, Jack H. Lutz, Vasant Honavar. EIT 2008, 448-452. Web SearchBibTeXDownload

107

Unsupervised Learning of Probabilistic Context-Free Grammar using Iterative Biclustering. Kewei Tu, Vasant Honavar. ICGI 2008, 224-237. Web SearchBibTeXDownload

106

TCP-Compose* - A TCP-Net Based Algorithm for Efficient Composition of Web Services Using Qualitative Preferences. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. ICSOC 2008, 453-467. Web SearchBibTeXDownload

105

Attribute Value Taxonomy Generation through Matrix Based Adaptive Genetic Algorithm. Hyunsung Jo, Yong-chan Na, Byonghwa Oh, Jihoon Yang, Vasant Honavar. ICTAI (1) 2008, 393-400. Web SearchBibTeXDownload

104

Composing Web Services through Automatic Reformulation of Service Specifications. Jyotishman Pathak, Samik Basu, Vasant Honavar. IEEE SCC (1) 2008, 361-369. Web SearchBibTeXDownload

103

MOSCOE: an Approach for Composing Web Services through Iterative Reformulation of Functional Specifications. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. International Journal on Artificial Intelligence Tools (17): 109-138 (2008). Web SearchBibTeXDownload

102

Striking Similarities in Diverse Telomerase Proteins Revealed by Combining Structure Prediction and Machine Learning Approaches. Jae-Hyung Lee, Michael Hamilton, Colin Gleeson, Cornelia Caragea, Peter Zaback, Jeffry D. Sander, Li C. Xue, Feihong Wu, Michael Terribilini, Vasant Honavar, Drena Dobbs. Pacific Symposium on Biocomputing 2008, 501-512. Web SearchBibTeXDownload

101

On Utilizing Qualitative Preferences in Web Service Composition: A CP-net Based Approach. Ganesh Ram Santhanam, Samik Basu, Vasant Honavar. SERVICES I 2008, 538-544. Web SearchBibTeXDownload

100

Visual Methods for Examining SVM Classifiers. Doina Caragea, Dianne Cook, Hadley Wickham, Vasant Honavar. Visual Data Mining 2008, 136-153. Web SearchBibTeXDownload

Learning Classifiers from Large Databases Using Statistical Queries. Neeraj Koul, Cornelia Caragea, Vasant Honavar, Vikas Bahirwani, Doina Caragea. Web Intelligence 2008, 923-926. Web SearchBibTeXDownload

Federated ALCI: Preliminary Report. George Voutsadakis, Giora Slutzki, Vasant Honavar, Jie Bao. Web Intelligence 2008, 575-578. Web SearchBibTeXDownload

2007

A Semantic Importing Approach to Knowledge Reuse from Multiple Ontologies. Jie Bao, Giora Slutzki, Vasant Honavar. AAAI 2007, 1304-1309. Web SearchBibTeX

Reports on the 2006 AAAI Fall Symposia. Joshua Clifford Bongard, Derek P. Brock, Samuel G. Collins, Ramani Duraiswami, Tim Finin, Ian Harrison, Vasant Honavar, Gregory S. Hornby, Ari Jonsson, Mike Kassoff, David Kortenkamp, Sanjeev Kumar, Ken Murray, Alexander I. Rudnicky, Goran Trajkovski. AI Magazine (28): 88-92 (2007). Web SearchBibTeXDownload

Assessing the Performance of Macromolecular Sequence Classifiers. Cornelia Caragea, Jivko Sinapov, Vasant Honavar, Drena Dobbs. BIBE 2007, 320-326. Web SearchBibTeXDownload

Analysis of Protein Protein Dimeric Interfaces. Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honavar. BIBM 2007, 35. Web SearchBibTeXDownload

Glycosylation site prediction using ensembles of Support Vector Machine classifiers. Cornelia Caragea, Jivko Sinapov, Adrian Silvescu, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. Carson M. Andorf, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload

Assembling Composite Web Services from Autonomous Components. Jyotishman Pathak, Samik Basu, Vasant Honavar. Emerging Artificial Intelligence Applications in Computer Engineering 2007, 394-405. Web SearchBibTeX

On Context-Specific Substitutability of Web Services. Jyotishman Pathak, Samik Basu, Vasant Honavar. ICWS 2007, 192-199. Web SearchBibTeXDownload

Integrated Decision Algorithms for Auto-steered Electric Transmission System Asset Management. James D. McCalley, Vasant Honavar, Sarah M. Ryan, William Q. Meeker, Daji Qiao, Ronald A. Roberts, Yuan Li, Jyotishman Pathak, Mujing Ye, Yili Hong. International Conference on Computational Science (1) 2007, 1066-1073. Web SearchBibTeXDownload

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Michael Terribilini, Jeffry D. Sander, Jae-Hyung Lee, Peter Zaback, Robert L. Jernigan, Vasant Honavar, Drena Dobbs. Nucleic Acids Research (35): 578-584 (2007). Web SearchBibTeXDownload

Privacy-Preserving Reasoning on the SemanticWeb. Jie Bao, Giora Slutzki, Vasant Honavar. Web Intelligence 2007, 791-797. Web SearchBibTeXDownload

2006

Experimental Comparison of Feature Subset Selection Using GA and ACO Algorithm. Keunjoon Lee, Jinu Joo, Jihoon Yang, Vasant Honavar. ADMA 2006, 465-472. Web SearchBibTeXDownload

Modular Ontologies - A Formal Investigation of Semantics and Expressivity. Jie Bao, Doina Caragea, Vasant Honavar. ASWC 2006, 616-631. Web SearchBibTeXDownload

Predicting DNA-binding sites of proteins from amino acid sequence. Changhui Yan, Michael Terribilini, Feihong Wu, Robert L. Jernigan, Drena Dobbs, Vasant Honavar. BMC Bioinformatics (7): 262 (2006). Web SearchBibTeXDownload

Learning Classifiers from Distributed, Ontology-Extended Data Sources. Doina Caragea, Jun Zhang, Jyotishman Pathak, Vasant Honavar. DaWaK 2006, 363-373. Web SearchBibTeXDownload

A Tool for Collaborative Construction of Large Biological Ontologies. Jie Bao, Zhiliang Hu, Doina Caragea, James Reecy, Vasant Honavar. DEXA Workshops 2006, 191-195. Web SearchBibTeXDownload

Parallel Web Service Composition in MoSCoE: A Choreography-Based Approach. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ECOWS 2006, 3-12. Web SearchBibTeXDownload

Condition Data Aggregation with Application to Failure Rate Calculation of Power Transformers. Jyotishman Pathak, Yong Jiang, Vasant Honavar, James D. McCalley. HICSS 2006. Web SearchBibTeXDownload

MoSCoE: A Framework for Modeling Web Service Composition and Execution. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ICDE Workshops 2006, 143. Web SearchBibTeXDownload

Modeling Web Services by Iterative Reformulation of Functional and Non-functional Requirements. Jyotishman Pathak, Samik Basu, Vasant Honavar. ICSOC 2006, 314-326. Web SearchBibTeXDownload

A Service-Oriented Architecture for Electric Power Transmission System Asset Management. Jyotishman Pathak, Yuan Li, Vasant Honavar, James D. McCalley. ICSOC Workshops 2006, 26-37. Web SearchBibTeXDownload

Selecting and Composing Web Services through Iterative Reformulation of Functional Specifications. Jyotishman Pathak, Samik Basu, Robyn R. Lutz, Vasant Honavar. ICTAI 2006, 445-454. Web SearchBibTeXDownload

Auto-steered Information-Decision Processes for Electric System Asset Management. James D. McCalley, Vasant Honavar, Sarah M. Ryan, William Q. Meeker, Ronald A. Roberts, Daji Qiao, Yuan Li. International Conference on Computational Science (3) 2006, 440-447. Web SearchBibTeXDownload

Package-Based Description Logics - Preliminary Results. Jie Bao, Doina Caragea, Vasant Honavar. International Semantic Web Conference 2006, 967-969. Web SearchBibTeXDownload

On the Semantics of Linking and Importing in Modular Ontologies. Jie Bao, Doina Caragea, Vasant Honavar. International Semantic Web Conference 2006, 72-86. Web SearchBibTeXDownload

Towards the automatic generation of mobile agents for distributed intrusion detection system. Yanxin Wang, Smruti Ranjan Behera, Johnny Wong, Guy G. Helmer, Vasant Honavar, Les Miller, Robyn R. Lutz, Mark Slagell. Journal of Systems and Software (79): 1-14 (2006). Web SearchBibTeXDownload

Learning accurate and concise naïve Bayes classifiers from attribute value taxonomies and data. Jun Zhang, Dae-Ki Kang, Adrian Silvescu, Vasant Honavar. Knowl. Inf. Syst. (9): 157-179 (2006). Web SearchBibTeXDownload

Adapt OWL as a Modular Ontology Language. Jie Bao, Vasant Honavar. OWLED 2006. Web SearchBibTeXDownload

TRIPPER: Rule Learning Using Taxonomies. Flavian Vasile, Adrian Silvescu, Dae-Ki Kang, Vasant Honavar. PAKDD 2006, 55-59. Web SearchBibTeXDownload

RNBL-MN: A Recursive Naive Bayes Learner for Sequence Classification. Dae-Ki Kang, Adrian Silvescu, Vasant Honavar. PAKDD 2006, 45-54. Web SearchBibTeXDownload

Efficient Markov Network Structure Discovery using Independence Tests. Facundo Bromberg, Dimitris Margaritis, Vasant Honavar. SDM 2006. Web SearchBibTeXDownload

A Tableau-Based Federated Reasoning Algorithm for Modular Ontologies. Jie Bao, Doina Caragea, Vasant Honavar. Web Intelligence 2006, 404-410. Web SearchBibTeXDownload

Divide and Conquer Semantic Web with Modular Ontologies - A Brief Review of Modular Ontology Language Formalisms. Jie Bao, Vasant Honavar. WoMO 2006. Web SearchBibTeXDownload

2005

Learning Support Vector Machines from Distributed Data Sources. Cornelia Caragea, Doina Caragea, Vasant Honavar. AAAI 2005, 1602-1603. Web SearchBibTeX

Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources. Doina Caragea, Jun Zhang, Jie Bao, Jyotishman Pathak, Vasant Honavar. ALT 2005, 13-44. Web SearchBibTeXDownload

Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and Rna Binding Sites in Rev Proteins of Hiv-1 and Eiav Agree with Experimental Data. Michael Terribilini, Jae-Hyung Lee, Changhui Yan, Robert L. Jernigan, Susan Carpenter, Vasant Honavar, Drena Dobbs. CoRR (abs/cs/0511075) (2005). Web SearchBibTeXDownload

Information Integration from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jie Bao, Jyotishman Pathak, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DEXA Workshops 2005, 580-584. Web SearchBibTeXDownload

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. Doina Caragea, Jyotishman Pathak, Jie Bao, Adrian Silvescu, Carson M. Andorf, Drena Dobbs, Vasant Honavar. DILS 2005, 175-190. Web SearchBibTeXDownload

Learning Ontology-Aware Classifiers. Jun Zhang, Doina Caragea, Vasant Honavar. Discovery Science 2005, 308-321. Web SearchBibTeXDownload

Discriminatively Trained Markov Model for Sequence Classification. Oksana Yakhnenko, Adrian Silvescu, Vasant Honavar. ICDM 2005, 498-505. Web SearchBibTeXDownload

Learning Classifiers for Misuse Detection Using a Bag of System Calls Representation. Dae-Ki Kang, Doug Fuller, Vasant Honavar. ISI 2005, 511-516. Web SearchBibTeXDownload

Learning Classifiers Using Hierarchically Structured Class Taxonomies. Feihong Wu, Jun Zhang, Vasant Honavar. SARA 2005, 313-320. Web SearchBibTeXDownload

Multinomial Event Model Based Abstraction for Sequence and Text Classification. Dae-Ki Kang, Jun Zhang, Adrian Silvescu, Vasant Honavar. SARA 2005, 134-148. Web SearchBibTeXDownload

A framework for semantic web services discovery. Jyotishman Pathak, Neeraj Koul, Doina Caragea, Vasant Honavar. WIDM 2005, 45-50. Web SearchBibTeXDownload

2004

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods. Taner Z. Sen, Andrzej Kloczkowski, Robert L. Jernigan, Changhui Yan, Vasant Honavar, Kai-Ming Ho, Cai-Zhuang Wang, Yungok Ihm, Haibo Cao, Xun Gu, Drena Dobbs. BMC Bioinformatics (5): 205 (2004). Web SearchBibTeXDownload

Learning Classifiers from Semantically Heterogeneous Data. Doina Caragea, Jyotishman Pathak, Vasant Honavar. CoopIS/DOA/ODBASE (2) 2004, 963-980. Web SearchBibTeXDownload

Generating AVTs Using GA for Learning Decision Tree Classifiers with Missing Data. Jinu Joo, Jun Zhang, Jihoon Yang, Vasant Honavar. Discovery Science 2004, 347-354. Web SearchBibTeXDownload

Generation of Attribute Value Taxonomies from Data for Data-Driven Construction of Accurate and Compact Classifiers. Dae-Ki Kang, Adrian Silvescu, Jun Zhang, Vasant Honavar. ICDM 2004, 130-137. Web SearchBibTeXDownload

AVT-NBL: An Algorithm for Learning Compact and Accurate Naïve Bayes Classifiers from Attribute Value Taxonomies and Data. Jun Zhang, Vasant Honavar. ICDM 2004, 289-296. Web SearchBibTeXDownload

Integration of Domain-Specific and Domain-Independent Ontologies for Colonoscopy Video Database Annotation. Jie Bao, Yu Cao, Wallapak Tavanapong, Vasant Honavar. IKE 2004, 82-90. Web SearchBibTeX

A Framework for Learning from Distributed Data Using Sufficient Statistics and Its Application to Learning Decision Trees. Doina Caragea, Adrian Silvescu, Vasant Honavar. Int. J. Hybrid Intell. Syst. (1): 80-89 (2004). Web SearchBibTeXDownload

A two-stage classifier for identification of protein-protein interface residues. Changhui Yan, Drena Dobbs, Vasant Honavar. ISMB/ECCB (Supplement of Bioinformatics) 2004, 371-378. Web SearchBibTeXDownload

Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach. Changhui Yan, Vasant Honavar, Drena Dobbs. Neural Computing and Applications (13): 123-129 (2004). Web SearchBibTeXDownload

Ontology-Extended Component-Based Workflows : A Framework for Constructing Complex Workflows from Semantically Heterogeneous Software Components. Jyotishman Pathak, Doina Caragea, Vasant Honavar. SWDB 2004, 41-56. Web SearchBibTeXDownload

2003

Towards Simple, Easy-to-Understand, yet Accurate Classifiers. Doina Caragea, Dianne Cook, Vasant Honavar. ICDM 2003, 497-500. Web SearchBibTeXDownload

Learning from Attribute Value Taxonomies and Partially Specified Instances. Jun Zhang, Vasant Honavar. ICML 2003, 880-887. Web SearchBibTeX

Statistics Gathering for Learning from Distributed, Heterogeneous and Autonomous Data Sources. Doina Caragea, Jaime Reinoso, Adrian Silvescu, Vasant Honavar. IIWeb 2003, 99-104. Web SearchBibTeXDownload

A Multi-relational Decision Tree Learning Algorithm - Implementation and Experiments. Anna Atramentov, Hector Leiva, Vasant Honavar. ILP 2003, 38-56. Web SearchBibTeXDownload

Automated data-driven discovery of motif-based protein function classifiers. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. Inf. Sci. (155): 1-18 (2003). Web SearchBibTeXDownload

Information Extraction and Integration from Heterogeneous, Distributed, Autonomous Information Sources : A Federated Ontology-Driven Query-Centric Approach. Jaime Reinoso, Adrian Silvescu, Doina Caragea, Jyotishman Pathak, Vasant Honavar. IRI 2003, 183-191. Web SearchBibTeX

Lightweight agents for intrusion detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller, Yanxin Wang. Journal of Systems and Software (67): 109-122 (2003). Web SearchBibTeXDownload

Learning Decision Trees form Distributed Heterogeneous Autonomous Data. Doina Caragea, Adrian Silvescu, Vasant Honavar. MAICS 2003, 10-17. Web SearchBibTeX

2002

Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences. Carson M. Andorf, Drena Dobbs, Vasant Honavar. JCIS 2002, 1200-1206. Web SearchBibTeX

Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase Families. Xiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. JCIS 2002, 1193-1199. Web SearchBibTeX

Automated discovery of concise predictive rules for intrusion detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller. Journal of Systems and Software (60): 165-175 (2002). Web SearchBibTeXDownload

A Software Fault Tree Approach to Requirements Analysis of an Intrusion Detection System. Guy G. Helmer, Johnny S. Wong, Mark Slagell, Vasant Honavar, Les Miller, Robyn R. Lutz. Requir. Eng. (7): 207-220 (2002). Web SearchBibTeXDownload

Ontology-Driven Induction of Decision Trees at Multiple Levels of Abstraction. Jun Zhang, Adrian Silvescu, Vasant Honavar. SARA 2002, 316-323. Web SearchBibTeXDownload

2001

Analysis and Synthesis of Agents That Learn from Distributed Dynamic Data Sources. Doina Caragea, Adrian Silvescu, Vasant Honavar. Emergent Neural Computational Architectures Based on Neuroscience 2001, 547-559. Web SearchBibTeXDownload

Learn++: an incremental learning algorithm for supervised neural networks. Robi Polikar, L. Upda, S. S. Upda, Vasant Honavar. IEEE Transactions on Systems, Man, and Cybernetics, Part C (31): 497-508 (2001). Web SearchBibTeXDownload

Autonomous agents for coordinated distributed parameterized heuristic routing in large dynamic communication networks. Armin R. Mikler, Vasant Honavar, Johnny S. Wong. Journal of Systems and Software (56): 231-246 (2001). Web SearchBibTeXDownload

SMART mobile agent facility. Johnny Wong, Guy G. Helmer, Venkatraman Naganathan, Sriniwas Polavarapu, Vasant Honavar, Les Miller. Journal of Systems and Software (56): 9-22 (2001). Web SearchBibTeXDownload

Gaining insights into support vector machine pattern classifiers using projection-based tour methods. Doina Caragea, Dianne Cook, Vasant Honavar. KDD 2001, 251-256. Web SearchBibTeXDownload

Learning DFA from Simple Examples. Rajesh Parekh, Vasant Honavar. Machine Learning (44): 9-35 (2001). Web SearchBibTeXDownload

2000

Incremental and Distributed Learning with Support Vector Machines. Doina Caragea, Adrian Silvescu, Vasant Honavar. AAAI/IAAI 2000, 1067. Web SearchBibTeX

On the Relationship between Models for Learning in Helpful Environments. Rajesh Parekh, Vasant Honavar. ICGI 2000, 207-220. Web SearchBibTeXDownload

Supporting organizational knowledge management with agents. Prashant Pai, Leslie L. Miller, Vasant Honavar, Johnny Wong, Sree Nilakanta. IRMA Conference 2000, 325-329. Web SearchBibTeX

A Negotiation Model in Agent-mediated Electronic Commerce. Mokdong Chug, Vasant Honavar. ISMSE 2000, 403-410. Web SearchBibTeXDownload

1999

Integration of cognitive systems across disciplinary boundaries. Ron Sun, Vasant Honavar, Gregg C. Oden. Cognitive Systems Research (1): 1-3 (1999). Web SearchBibTeXDownload

Feature Selection Using a Genetic Algorithm for Intrusion Detection. Guy G. Helmer, Johnny S. Wong, Vasant Honavar, Les Miller. GECCO 1999, 1781. Web SearchBibTeX

Simple DFA are Polynomially Probably Exactly Learnable from Simple Examples. Rajesh Parekh, Vasant Honavar. ICML 1999, 298-306. Web SearchBibTeX

Data-Driven Theory Refinement Using KBDistAl. Jihoon Yang, Rajesh Parekh, Vasant Honavar, Drena Dobbs. IDA 1999, 331-342. Web SearchBibTeXDownload

A neural-network architecture for syntax analysis. Chun-Hsien Chen, Vasant Honavar. IEEE Transactions on Neural Networks (10): 94-114 (1999). Web SearchBibTeXDownload

DistAl: An inter-pattern distance-based constructive learning algorithm. Jihoon Yang, Rajesh Parekh, Vasant Honavar. Intell. Data Anal. (3): 55-73 (1999). Web SearchBibTeXDownload

1998

A Polynominal Time Incremental Algorithm for Learning DFA. Rajesh Parekh, Codrin M. Nichitiu, Vasant Honavar. ICGI 1998, 37-49. Web SearchBibTeXDownload

Feature Subset Selection Using a Genetic Algorithm. Jihoon Yang, Vasant Honavar. IEEE Intelligent Systems (13): 44-49 (1998). Web SearchBibTeX

An object oriented approach to simulating large communication networks. Armin R. Mikler, Johnny S. K. Wong, Vasant Honavar. Journal of Systems and Software (40): 151-164 (1998). Web SearchBibTeXDownload

1997

Learning DFA from Simple Examples. Rajesh Parekh, Vasant Honavar. ALT 1997, 116-131. Web SearchBibTeXDownload

Quo Vadis - A Framework for Intelligent Routing in Large Communication Networks. Armin R. Mikler, Johnny S. Wong, Vasant Honavar. Journal of Systems and Software (37): 61-73 (1997). Web SearchBibTeX

1996

Analysis of Utility-Theoretic Heuristics for Intelligent Adaptive Network Routing. Armin R. Mikler, Vasant Honavar, Johnny S. Wong. AAAI/IAAI, Vol. 1 1996, 96-101. Web SearchBibTeX

An Incremental Interactive Algorithm for Regular Grammar Inference. Rajesh Parekh, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1397. Web SearchBibTeX

Experiments in Evolutionary Synthesis of Robotic Neurocontrollers. Karthik Balakrishnan, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1378. Web SearchBibTeX

Constructive Neural Network Learning Algorithms. Rajesh Parekh, Jihoon Yang, Vasant Honavar. AAAI/IAAI, Vol. 2 1996, 1398. Web SearchBibTeX

An incremental interactive algorithm for grammar inference. Rajesh Parekh, Vasant Honavar. ICGI 1996, 238-249. Web SearchBibTeXDownload

1995

A Neural Architecture for Content as well as Address-based Storage and Recall: Theory and Applications. Chun-Hsien Chen, Vasant Honavar. Connect. Sci. (7): 281-300 (1995). Web SearchBibTeXDownload

1993

Generative learning structures and processes for generalized connectionist networks. Vasant Honavar, Leonard Uhr. Inf. Sci. (70): 75-108 (1993). Web SearchBibTeXDownload

1992

Neural Network Design and the Complexity of Learning (Book Review). Vasant Honavar. Machine Learning (9): 95-98 (1992). Web SearchBibTeXDownload

1989

Generation, Local Receptive Fields and Global Convergence Improve Perceptual Learning in Connectionist Networks. Vasant Honavar, Leonard Uhr. IJCAI 1989, 180-185. Web SearchBibTeX

Professor
http://www.cs.iastate.edu/~honavar/
Department of Computer Science
Iowa State University
USA

Vasant Honavar

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1.	^ KDD 2007 Conference - Organizers Page - Retrieved 2009-11-21 - details Original context from http://www.sigkdd.org/kdd2007/organizers.html ... Vasant Honavar (Iowa State University, USA) ...
2.	^ ICML Workshop - Retrieved 2011-06-04 - details Original context from http://www-csli.stanford.edu/icml2k/sequential.html ...cts Organizing Committee Arun Jagota , University of California, Santa Cruz ( jagota@cse.ucsc.edu ) Vasant Honavar , Iowa State University ( honavar@cs.iastate.edu ) Stefan Schroedl , DaimlerChrysler ( schroedl@rtn...