Ying Xu

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2012
163A hybrid scatter search meta-heuristic for delay-constrained multicast routing problems. Ying Xu, Rong Qu. Appl. Intell. (36): 229-241 (2012). Web SearchBibTeXDownload
162An iterative local search approach based on fitness landscapes analysis for the delay-constrained multicast routing problem. Ying Xu, Rong Qu. Computer Communications (35): 352-365 (2012). Web SearchBibTeXDownload
2011
161Multi-task GLOH feature selection for human age estimation. Yixiong Liang, Lingbo Liu, Ying Xu, Yao Xiang, Beiji Zou. CoRR (abs/1102.2749) (2011). Web SearchBibTeXDownload
160Gaussian integral circulant digraphs. Ying Xu, Jixiang Meng. Discrete Mathematics (311): 45-50 (2011). Web SearchBibTeXDownload
159Wireless Sensing of Human Respiratory Parameters by Low-Power Ultrawideband Impulse Radio Radar. Joshua C. Y. Lai, Ying Xu, Erry Gunawan, E. C. Chua, A. Maskooki, Yong Liang Guan, Kay Soon Low, Cheong Boon Soh, Chueh-Loo Poh. IEEE T. Instrumentation and Measurement (60): 928-938 (2011). Web SearchBibTeXDownload
158Solving multi-objective multicast routing problems by evolutionary multi-objective simulated annealing algorithms with variable neighbourhoods. Ying Xu, Rong Qu. JORS (62): 313-325 (2011). Web SearchBibTeXDownload
157Stochastic kronecker graphs. Mohammad Mahdian, Ying Xu. Random Struct. Algorithms (38): 453-466 (2011). Web SearchBibTeXDownload
156A Multi-layer Model for Face Aging Simulation. Yixiong Liang, Ying Xu, Lingbo Liu, Shenghui Liao, Beiji Zou. T. Edutainment (6): 182-192 (2011). Web SearchBibTeXDownload
155On the Super Codes of the First Order Reed-Muller Code Based on m-Sequence Pairs. Ying Xu, Yuejun Wei, Yuhang Yang, Wen Chen. VTC Spring 2011, 1-5. Web SearchBibTeXDownload
2010
154The nature of noise in linguistic corpora. Randy Goebel, Shane Bergsma, Ying Xu, Christoph Ringlstetter, Mi-Young Kim. AND 2010, 1-2. Web SearchBibTeXDownload
153GolgiP: prediction of Golgi-resident proteins in plants. Wen-Chi Chou, Yanbin Yin, Ying Xu. Bioinformatics (26): 2464-2465 (2010). Web SearchBibTeXDownload
152cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Fengfeng Zhou, Ying Xu. Bioinformatics (26): 2051-2052 (2010). Web SearchBibTeXDownload
151In-silico prediction of blood-secretory human proteins using a ranking algorithm. Qi Liu, Juan Cui, Qiang Yang, Ying Xu. BMC Bioinformatics (11): 250 (2010). Web SearchBibTeXDownload
150An improved Particle Swarm Optimization algorithm. Ping Luo, Ying Xu, Lihai Yao, Yaolin Lou. ICNC 2010, 2576-2580. Web SearchBibTeXDownload
149Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions. Xingqin Qi, Guojun Li, Shuguang Li, Ying Xu. IEEE/ACM Trans. Comput. Biology Bioinform. (7): 365-374 (2010). Web SearchBibTeXDownload
148Service level differentiation in multi-robots control. Ying Xu, Tinglong Dai, Katia P. Sycara, Michael Lewis. IROS 2010, 2224-2230. Web SearchBibTeXDownload
147Foreword: Advances in Computational Systems Bioinformatics. Ying Xu, Peter W. Markstein. J. Bioinformatics and Computational Biology (8) (2010). Web SearchBibTeXDownload
146Physical Design Methodology for Godson-2G Microprocessor. Ji-Ye Zhao, Dong Liu, Dan-Dan Huan, Meng-Hao Su, Bin Xiao, Ying Xu, Feng Shi, Chen Chen, Song Wang. J. Comput. Sci. Technol. (25): 225-231 (2010). Web SearchBibTeXDownload
145Physical Implementation of the 1GHz Godson-3 Quad-Core Microprocessor. Bao-Xia Fan, Liang Yang, Jiang-Mei Wang, Ru Wang, Bin Xiao, Ying Xu, Dong Liu, Ji-Ye Zhao. J. Comput. Sci. Technol. (25): 192-199 (2010). Web SearchBibTeXDownload
144Using Kernel Discriminant Analysis and 2DGabor Local Features Fusion for Face Recognition. KeZheng Lin, Ying Xu, Yuan Zhong. JDCTA (4): 232-241 (2010). Web SearchBibTeXDownload
143Retransmission != repeat: simple retransmission permutation can resolve overlapping channel collisions. Erran L. Li, Kun Tan, Harish Viswanathan, Ying Xu, Yang Richard Yang. MOBICOM 2010, 281-292. Web SearchBibTeXDownload
142On the Performance Evaluation of Quasi-Cyclic LDPC Codes with Arbitrary Puncturing. Ying Xu, Yuejun Wei, Wen Chen. VTC Spring 2010, 1-5. Web SearchBibTeXDownload
2009
141A polynomial-time approximation scheme for embedding hypergraph in a cycle. Guojun Li, Xiaotie Deng, Ying Xu. ACM Transactions on Algorithms (5) (2009). Web SearchBibTeXDownload
140De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu. Bioinformatics (25): 2897-2905 (2009). Web SearchBibTeXDownload
139Analyses of domains and domain fusions in human proto-oncogenes. Qi Liu, Jinling Huang, Huiqing Liu, Ping Wan, Xiuzi Ye, Ying Xu. BMC Bioinformatics (10) (2009). Web SearchBibTeXDownload
138Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays. Mi-Chia Ma, Hsiao-Fang Lin, Ying Xu. BMEI 2009, 1-5. Web SearchBibTeXDownload
137Pricing strategies for viral marketing on Social Networks. David Arthur, Rajeev Motwani, Aneesh Sharma, Ying Xu. CoRR (abs/0902.3485) (2009). Cited by 2Web SearchBibTeXDownload
136Research on Operating Parameters and Energy Consumption of Cold Store Based on Rough Set Theory. Jianyi Zhang, Ying Xu, Fei Chen. FSKD (5) 2009, 207-210. Web SearchBibTeXDownload
135Large-Scale Analyses of Glycosylation in Cellulases. Fengfeng Zhou, Victor Olman, Ying Xu. Genomics, Proteomics & Bioinformatics (7): 194-199 (2009). Web SearchBibTeXDownload
134Scientific Application Based Performance on Magic Cube. Ying Xu, D. D. Zhang, Lei Xu. HPCA (China) 2009, 485-490. Web SearchBibTeXDownload
133Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics. Victor Olman, Fenglou Mao, Hongwei Wu, Ying Xu. IEEE/ACM Trans. Comput. Biology Bioinform. (6): 344-352 (2009). Web SearchBibTeXDownload
132A Universal operon Predictor for prokaryotic genomes. Guojun Li, Dongsheng Che, Ying Xu. J. Bioinformatics and Computational Biology (7): 19-38 (2009). Web SearchBibTeXDownload
131Computational Challenges in Deciphering Genomic Structures of Bacteria. Ying Xu. J. Comput. Sci. Technol. (25): 53-70 (2009). Web SearchBibTeXDownload
130A Variable Neighborhood Descent Search Algorithm for Delay-Constrained Least-Cost Multicast Routing. Rong Qu, Ying Xu, Graham Kendall. LION 2009, 15-29. Web SearchBibTeXDownload
129DOOR: a database for prokaryotic operons. Fenglou Mao, PhuongAn Dam, Jacky Chou, Victor Olman, Ying Xu. Nucleic Acids Research (37): 459-463 (2009). Web SearchBibTeXDownload
128Block Precoding Based ICI Mitigation Technique for OFDM System. Yikui Zhai, Ying Xu. PACCS 2009, 58-61. Web SearchBibTeXDownload
127Prediction in Dynamic SDRAM Controller Policies. Ying Xu, Aabhas S. Agarwal, Brian T. Davis. SAMOS 2009, 128-138. Web SearchBibTeXDownload
126Pricing Strategies for Viral Marketing on Social Networks. David Arthur, Rajeev Motwani, Aneesh Sharma, Ying Xu. WINE 2009, 101-112. Web SearchBibTeXDownload
2008
125An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu. Algorithmica (51): 435-450 (2008). Web SearchBibTeXDownload
124Computational prediction of human proteins that can be secreted into the bloodstream. Juan Cui, Qi Liu, David Puett, Ying Xu. Bioinformatics (24): 2370-2375 (2008). Web SearchBibTeXDownload
123Barcodes for genomes and applications. Fengfeng Zhou, Victor Olman, Ying Xu. BMC Bioinformatics (9) (2008). Web SearchBibTeXDownload
122Link privacy in social networks. Aleksandra Korolova, Rajeev Motwani, Shubha U. Nabar, Ying Xu. CIKM 2008, 289-298. Web SearchBibTeXDownload
121Reconstruction of the Infection Curve for SARS Epidemic in Beijing, China Using a Back-Projection Method. Paul S. F. Yip, K. F. Lam, Ying Xu, P. H. Chau, Jing Xu, Wenhu Chang, Yingchun Peng, Zejun Liu, Xueqin Xie, H. Y. Lau. Communications in Statistics - Simulation and Computation (37): 425-433 (2008). Web SearchBibTeXDownload
120On application of directons to functional classification of genes in prokaryotes. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu. Computational Biology and Chemistry (32): 176-184 (2008). Web SearchBibTeXDownload
119Link Privacy in Social Networks. Aleksandra Korolova, Rajeev Motwani, Shubha U. Nabar, Ying Xu. ICDE 2008, 1355-1357. Web SearchBibTeXDownload
118Deterministic Decentralized Search in Random Graphs. Esteban Arcaute, Ning Chen, Ravi Kumar, David Liben-Nowell, Mohammad Mahdian, Hamid Nazerzadeh, Ying Xu. Internet Mathematics (5): 141-154 (2008). Web SearchBibTeXDownload
117PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. Dongsheng Che, Guojun Li, Shane T. Jensen, Jun S. Liu, Ying Xu. ISBRA 2008, 110-121. Web SearchBibTeXDownload
116Protein Structure-structure Alignment with Discrete FrÉchet Distance. Minghui Jiang, Ying Xu, Binhai Zhu. J. Bioinformatics and Computational Biology (6): 51-64 (2008). Web SearchBibTeXDownload
115Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu. J. Bioinformatics and Computational Biology (6): 585-602 (2008). Web SearchBibTeXDownload
114RNACluster: An integrated tool for RNA secondary structure comparison and clustering. Qi Liu, Victor Olman, Huiqing Liu, Xiuzi Ye, Shilun Qiu, Ying Xu. Journal of Computational Chemistry (29): 1517-1526 (2008). Web SearchBibTeXDownload
2007
113An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu. Algorithmica (48): 329-342 (2007). Web SearchBibTeXDownload
112Protein Structure-Structure Alignment with Discrete Fr'echet Distance. Minghui Jiang, Ying Xu, Binhai Zhu. APBC 2007, 131-141. Web SearchBibTeXDownload
111Operon Prediction in Microbial Genomes Using Decision Tree Approach. Dongsheng Che, Jizhen Zhao, Liming Cai, Ying Xu. CIBCB 2007, 135-142. Web SearchBibTeXDownload
110Estimating Sum by Weighted Sampling. Rajeev Motwani, Rina Panigrahy, Ying Xu. ICALP 2007, 53-64. Cited by 2Web SearchBibTeXDownload
109A Novel Integrated Cell-Based Biosensor for Extracellular Electrophysiological Monitoring. Ying Xu, Hui Yu, Hua Cai, Qingjun Liu, Ping Wang. I. J. Information Acquisition (4): 193-204 (2007). Web SearchBibTeXDownload
108An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu. ISBRA 2007, 551-563. Web SearchBibTeXDownload
107Prediction of cis-Regulatory Elements: from High-Information Content Analysis to Motif Identification. Guojun Li, Jizhu Lu, Victor Olman, Ying Xu. J. Bioinformatics and Computational Biology (5): 817-838 (2007). Web SearchBibTeXDownload
106Deterministic Decentralized Search in Random Graphs. Esteban Arcaute, Ning Chen, Ravi Kumar, David Liben-Nowell, Mohammad Mahdian, Hamid Nazerzadeh, Ying Xu. WAW 2007, 187-194. Web SearchBibTeXDownload
105Stochastic Kronecker Graphs. Mohammad Mahdian, Ying Xu. WAW 2007, 179-186. Web SearchBibTeXDownload
2006
104A Complex Applications Framework Supporting Tolerant Dynamic Vehicle Dispatching. Ilham Benyahia, Jean-Yves Potvin, Ying Xu. AICCSA 2006, 875-881. Web SearchBibTeXDownload
103Fractional Matching Via Balls-and-Bins. Rajeev Motwani, Rina Panigrahy, Ying Xu. APPROX-RANDOM 2006, 487-498. Cited by 2Web SearchBibTeXDownload
102CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu. Bioinformatics (22): 894-896 (2006). Web SearchBibTeXDownload
101libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. Xinglai Ji, Ying Xu. Bioinformatics (22): 124-126 (2006). Web SearchBibTeXDownload
100Estimating corpus size via queries. Andrei Z. Broder, Marcus Fontoura, Vanja Josifovski, Ravi Kumar, Rajeev Motwani, Shubha U. Nabar, Rina Panigrahy, Andrew Tomkins, Ying Xu. CIKM 2006, 594-603. Cited by 21Web SearchBibTeXDownload
99A System for Project Distribution Based on the Semantic Matching Method. Ying Xu, Fu-yuan Xu, Sheng-qi Li. CIMCA/IAWTIC 2006, 187. Web SearchBibTeXDownload
98Research on Context Modeling Based on Ontology. Ying Xu, Fu-yuan Xu. CIMCA/IAWTIC 2006, 188. Web SearchBibTeXDownload
97Researching on The Method and Technology of Creating Temporal Categories for an Ontology of Time. Ying Xu, Fu-yuan Xu. CIMCA/IAWTIC 2006, 264. Web SearchBibTeXDownload
96Vehicle routing and scheduling with dynamic travel times. Jean-Yves Potvin, Ying Xu, Ilham Benyahia. Computers & OR (33): 1129-1137 (2006). Web SearchBibTeXDownload
95Understanding microbial genomic structures and applications to biological pathway inference. Zhengchang Su, Fenglou Mao, Hongwei Wu, PhuongAn Dam, Xin Chen, Tao Jiang, Victor Olman, Brian Palenik, Ying Xu. GrC 2006, 23-24. Web SearchBibTeXDownload
94Design and Performance Evaluation of a Proxy-based Java Rewriting Security System. Yougang Song, Ying Xu, Brett D. Fleisch. ICDCS 2006, 11. Web SearchBibTeXDownload
93Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai. IEEE/ACM Trans. Comput. Biology Bioinform. (3): 423-432 (2006). Web SearchBibTeXDownload
92DigitalTree: A Tool for Displaying Biological Data in Tree Structure. Robin Kramer, Victor Olman, Ying Xu, Dong Xu. International Conference on Computational Science (2) 2006, 855-862. Web SearchBibTeXDownload
91Peptide sequence tag-based blind identification of post-translational modifications with point process model. Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai. ISMB (Supplement of Bioinformatics) 2006, 307-313. Web SearchBibTeXDownload
90Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. Victor Olman, Chindo Hicks, Peng Wang, Ying Xu. J. Bioinformatics and Computational Biology (4): 999-1014 (2006). Web SearchBibTeXDownload
89Structure Prediction of Helical Transmembrane Proteins at Two Length Scales. Zhong Chen, Ying Xu. J. Bioinformatics and Computational Biology (4): 317-334 (2006). Web SearchBibTeXDownload
88SUMOsp: a web server for sumoylation site prediction. Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao. Nucleic Acids Research (34): 254-257 (2006). Web SearchBibTeXDownload
87Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai. Pacific Symposium on Biocomputing 2006, 255-266. Web SearchBibTeXDownload
86A Point-Process Model for Rapid Identification of Post-Translational Modifications. Bo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu. Pacific Symposium on Biocomputing 2006, 327-338. Web SearchBibTeXDownload
85Evolution of page popularity under random web graph models. Rajeev Motwani, Ying Xu. PODS 2006, 134-142. Cited by 7Web SearchBibTeXDownload
2005
84MPSS: an integrated database system for surveying a set of proteins. Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Boshu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong. Bioinformatics (21): 2142-2143 (2005). Web SearchBibTeXDownload
83A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu. Bioinformatics (21): 563-574 (2005). Web SearchBibTeXDownload
82Two Can Keep A Secret: A Distributed Architecture for Secure Database Services. Gagan Aggarwal, Mayank Bawa, Prasanna Ganesan, Hector Garcia-Molina, Krishnaram Kenthapadi, Rajeev Motwani, Utkarsh Srivastava, Dilys Thomas, Ying Xu. CIDR 2005, 186-199. Cited by 67Web SearchBibTeXDownload
81On Connected [g, f +1]-Factors in Graphs. Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu. Combinatorica (25): 393-405 (2005). Web SearchBibTeXDownload
80On the robustness of router-based denial-of-service (DoS) defense systems. Ying Xu, Roch Guérin. Computer Communication Review (35): 47-60 (2005). Web SearchBibTeXDownload
79Accurate Prediction of Orthologous Gene Groups in Microbes. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu. CSB 2005, 73-79. Web SearchBibTeXDownload
78Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. Zhong Chen, Ying Xu. CSB 2005, 203-207. Web SearchBibTeXDownload
77PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. Guojun Li, Jizhu Lu, Victor Olman, Ying Xu. CSB Workshops 2005, 35-36. Web SearchBibTeXDownload
76Improving Operon Prediction in E. coli. PhuongAn Dam, Victor Olman, Ying Xu. CSB Workshops 2005, 69-70. Web SearchBibTeXDownload
75Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. Peng Wang, Bo Yan, Jun-tao Guo, Chindo Hicks, Ying Xu. CSB Workshops 2005, 217. Web SearchBibTeXDownload
74Individual QoS versus aggregate QoS: a loss performance study. Ying Xu, Roch Guérin. IEEE/ACM Trans. Netw. (13): 370-383 (2005). Web SearchBibTeXDownload
73Logistic support vector machines and their application to gene expression data. ZhenQiu Liu, Dechang Chen, Ying Xu, Jian Liu. IJBRA (1): 169-182 (2005). Web SearchBibTeXDownload
72The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu. J. Bioinformatics and Computational Biology (3): 455-476 (2005). Web SearchBibTeXDownload
71Clustering Gene Expression Data with Kernel Principal Components. ZhenQiu Liu, Dechang Chen, Halima Bensmail, Ying Xu. J. Bioinformatics and Computational Biology (3): 303-316 (2005). Web SearchBibTeXDownload
70PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu. J. Comput. Sci. Technol. (20): 483-490 (2005). Web SearchBibTeXDownload
69More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Romeo Rizzi, Dong Xu, Ying Xu, Ying Xu. Journal of Computational Biology (12): 129-146 (2005). Web SearchBibTeXDownload
68Intrusion Detection Combining Multiple Decision Trees by Fuzzy logic. Junfeng Tian, Yue Fu, Ying Xu, Jian-ling Wang. PDCAT 2005, 256-258. Web SearchBibTeXDownload
67Exact matching of RNA secondary structure patterns. Ying Xu, Lusheng Wang, Hao Zhao, Jianping Li. Theor. Comput. Sci. (335): 53-66 (2005). Web SearchBibTeXDownload
66Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai. WABI 2005, 376-388. Web SearchBibTeXDownload
2004
65Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu. BIBE 2004, 5-8. Web SearchBibTeXDownload
64Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs (MDGs). Ying Xu, Xiaoyu Song, Eduard Cerny, Otmane Aït Mohamed. Comput. J. (47): 71-84 (2004). Web SearchBibTeXDownload
63Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu. CSB 2004, 236-244. Web SearchBibTeXDownload
62A Knowledge Base for Computational Pathway Reconstruction. Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu. CSB 2004, 612-613. Web SearchBibTeXDownload
61Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu. CSB 2004, 640-641. Web SearchBibTeXDownload
60In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu. CSB 2004, 614-615. Web SearchBibTeXDownload
59Pathway Mapping with Operon Information: An Integer-Programming Method. Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu. CSB 2004, 642-643. Web SearchBibTeXDownload
58Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. Jun-tao Guo, Ying Xu. CSB 2004, 708-709. Web SearchBibTeXDownload
57CUBIC: Search for Binding Sites. Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu. CSB 2004, 666-667. Web SearchBibTeXDownload
56Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu. CSB 2004, 700-701. Web SearchBibTeXDownload
55Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu. CSB 2004, 363-370. Web SearchBibTeXDownload
54Exploring the Performance Benefits of End-to-End Path Switching. Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang. ICNP 2004, 304-315. Web SearchBibTeXDownload
53NFS-cc: tuning NFS for concurrent read sharing. Ying Xu, Brett D. Fleisch. IJHPCN (1): 203-213 (2004). Web SearchBibTeXDownload
52Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. Jinbo Xu, Ming Li, Ying Xu. J. Comb. Optim. (8): 403-418 (2004). Web SearchBibTeXDownload
51PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu. Nucleic Acids Research (32): 522-525 (2004). Web SearchBibTeX
50Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu. Pacific Symposium on Biocomputing 2004, 459-470. Web SearchBibTeXDownload
49Exploring the performance benefits of end-to-end path switching. Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang. SIGMETRICS 2004, 418-419. Web SearchBibTeXDownload
48Vision Paper: Enabling Privacy for the Paranoids. Gagan Aggarwal, Mayank Bawa, Prasanna Ganesan, Hector Garcia-Molina, Krishnaram Kenthapadi, Nina Mishra, Rajeev Motwani, Utkarsh Srivastava, Dilys Thomas, Jennifer Widom, Ying Xu. VLDB 2004, 708-719. Cited by 33Web SearchBibTeXDownload
2003
47An O(n1.5) Deterministic Gossiping Algorithm for Radio Networks. Ying Xu. Algorithmica (36): 93-96 (2003). Web SearchBibTeXDownload
46Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. Yu Chen, Trupti Joshi, Ying Xu, Dong Xu. BIBE 2003, 18-25. Web SearchBibTeXDownload
45A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu. BIBE 2003, 3-10. Web SearchBibTeXDownload
44Haplotype inference by maximum parsimony. Lusheng Wang, Ying Xu. Bioinformatics (19): 1773-1780 (2003). Web SearchBibTeXDownload
43Greedy method for inferring tandem duplication history. Louxin Zhang, Bin Ma, Lusheng Wang, Ying Xu. Bioinformatics (19): 1497-1504 (2003). Web SearchBibTeXDownload
42SEGID: Identifying Interesting Segments in (Multiple) Sequence Alignments. Lusheng Wang, Ying Xu. Bioinformatics (19): 297-298 (2003). Web SearchBibTeXDownload
41A computational pipeline for protein structure prediction and analysis at genome scale. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu. Bioinformatics (19): 1985-1996 (2003). Web SearchBibTeXDownload
40MOLVIE: an interactive visualization environment for molecular structures. Huandong Sun, Ming Li, Ying Xu. Computer Methods and Programs in Biomedicine (71): 85-90 (2003). Web SearchBibTeXDownload
39A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu. CSB 2003, 421-423. Web SearchBibTeXDownload
38CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. Victor Olman, Dong Xu, Ying Xu. CSB 2003, 448-449. Web SearchBibTeXDownload
37Computational Inference of Regulatory Pathways in Microbes. Zhengchang Su, PhuongAn Dam, Xin Chen, Victor Olman, Tao Jiang, Brian Palenik, Ying Xu. CSB 2003, 631-633. Web SearchBibTeXDownload
36More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Romeo Rizzi, Dong Xu, Ying Xu, Ying Xu. ESA 2003, 580-592. Web SearchBibTeXDownload
35Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu. J. Bioinformatics and Computational Biology (1): 387-410 (2003). Web SearchBibTeXDownload
34Raptor: Optimal Protein Threading by Linear Programming. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu. J. Bioinformatics and Computational Biology (1): 95-118 (2003). Web SearchBibTeXDownload
33Cubic: Identification of Regulatory Binding Sites through Data Clustering. Victor Olman, Dong Xu, Ying Xu. J. Bioinformatics and Computational Biology (1): 21-40 (2003). Web SearchBibTeXDownload
32Protein Threading by Linear Programming. Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu. Pacific Symposium on Biocomputing 2003, 264-275. Web SearchBibTeXDownload
31Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Victor Olman, Dong Xu, Ying Xu. Pacific Symposium on Biocomputing 2003, 327-338. Web SearchBibTeXDownload
30On Evaluating Loss Performance Deviation: A Simple Tool and Its Practical Implications. Ying Xu, Roch Guérin. QoS-IP 2003, 1-18. Web SearchBibTeXDownload
29Approximation algorithms for NMR spectral peak assignment. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu. Theor. Comput. Sci. (1-3): 211-229 (2003). Web SearchBibTeXDownload
2002
28Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Ying Xu, Victor Olman, Dong Xu. Bioinformatics (18): 536-545 (2002). Web SearchBibTeXDownload
27PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu. Bioinformatics (18): 1432-1437 (2002). Web SearchBibTeXDownload
26An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu. CSB 2002, 165-174. Web SearchBibTeXDownload
25Individual QoS versus Aggregate QoS: A Loss Performance Study. Ying Xu, Roch Guérin. INFOCOM 2002. Web SearchBibTeXDownload
24Improved Approximation Algorithms for NMR Spectral Peak Assignment. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu. WABI 2002, 82-96. Web SearchBibTeXDownload
2000
23Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher. Bioinformatics (16): 269-285 (2000). Web SearchBibTeXDownload
22Protein domain decomposition using a graph-theoretic approach. Ying Xu, Dong Xu, Harold N. Gabow. Bioinformatics (16): 1091-1104 (2000). Web SearchBibTeXDownload
21A Computational Method for NMR-Constrained Protein Threading. Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein. Journal of Computational Biology (7): 449-467 (2000). Web SearchBibTeX
20Protein structure determination using protein threading and sparse NMR data (extended abstract). Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu. RECOMB 2000, 299-307. Web SearchBibTeXDownload
1999
19Practical Application of Formal Verification Techniques on a Frame Mux/Demux Chip from Nortel Semiconductors. Ying Xu, Eduard Cerny, Allan Silburt, A. Coady, Ying Liu, Philip Pownall. CHARME 1999, 110-124. Web SearchBibTeXDownload
1998
18Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs. Ying Xu, Eduard Cerny, Xiaoyu Song, Francisco Corella, Otmane Aït Mohamed. CAV 1998, 219-231. Web SearchBibTeXDownload
17An Efficient Computational Method for Globally Optimal Threading. Ying Xu, Dong Xu, Edward C. Uberbacher. Journal of Computational Biology (5): 597 (1998). Web SearchBibTeX
16A segmentation algorithm for noisy images: Design and evaluation. Ying Xu, Victor Olman, Edward C. Uberbacher. Pattern Recognition Letters (19): 1213-1224 (1998). Web SearchBibTeXDownload
15A new method for modeling and solving the protein fold recognition problem (extended abstract). Ying Xu, Dong Xu, Edward C. Uberbacher. RECOMB 1998, 285-292. Web SearchBibTeXDownload
1997
142D image segmentation using minimum spanning trees. Ying Xu, Edward C. Uberbacher. Image Vision Comput. (15): 47-57 (1997). Web SearchBibTeXDownload
13Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. Ying Xu, Richard J. Mural, Edward C. Uberbacher. ISMB 1997, 344-353. Web SearchBibTeX
12Automated Gene Identification in Large-Scale Genomic Sequences. Ying Xu, Edward C. Uberbacher. Journal of Computational Biology (4): 325-338 (1997). Web SearchBibTeX
11Reference-based gene model prediction on DNA contigs (extended abstract). Ying Xu, Edward C. Uberbacher. RECOMB 1997, 330-336. Web SearchBibTeXDownload
1996
10MDG Tools for the Verification of RTL Designs. K. D. Anon, N. Boulerice, Eduard Cerny, Francisco Corella, Michel Langevin, Xiaoyu Song, Sofiène Tahar, Ying Xu, Zijian Zhou. CAV 1996, 433-436. Web SearchBibTeXDownload
9A polynomial-time algorithm for a class of protein threading problems. Ying Xu, Edward C. Uberbacher. Computer Applications in the Biosciences (12): 511-517 (1996). Web SearchBibTeXDownload
8Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher. Computers & Chemistry (20): 135-140 (1996). Web SearchBibTeXDownload
7Gene Prediction by Pattern Recognition and Homology Search. Ying Xu, Edward C. Uberbacher. ISMB 1996, 241-251. Web SearchBibTeX
6Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. Harold N. Gabow, Ying Xu. J. Comput. Syst. Sci. (53): 129-147 (1996). Web SearchBibTeXDownload
5An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. Ying Xu, Richard J. Mural, Edward C. Uberbacher. Journal of Computational Biology (3): 333-344 (1996). Web SearchBibTeX
1995
4Correcting sequencing errors in DNA coding regions using a dynamic programming approach. Ying Xu, Richard J. Mural, Edward C. Uberbacher. Computer Applications in the Biosciences (11): 117-124 (1995). Web SearchBibTeXDownload
1994
3Constructing gene models from accurately predicted exons: an application of dynamic programming. Ying Xu, Richard J. Mural, Edward C. Uberbacher. Computer Applications in the Biosciences (10): 613-623 (1994). Web SearchBibTeXDownload
2Fast Algorithms for Transversal Matroid Intersection Problems. Ying Xu, Harold N. Gabow. ISAAC 1994, 625-633. Web SearchBibTeXDownload
1989
1Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids. Harold N. Gabow, Ying Xu. FOCS 1989, 106-111. Web SearchBibTeXDownload
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