| 2010 |
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| 23 | Document classification for mining host pathogen protein-protein interactions. Lanlan Yin, Guixian Xu, Manabu Torii, Zhendong Niu, Jose M. Maisog, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu. Artificial Intelligence in Medicine (49): 155-160 (2010). Web SearchBibTeXDownload |
| 2009 |
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| 22 | Generating Abstract Networks Using Multi-relational Biological Data. Paul Caravelli, Mitchell Beard, Brian Gopalan, Lisa Singh, Zhang-Zhi Hu. IV 2009, 331-336. Web SearchBibTeXDownload |
| 21 | Research Paper: BioTagger-GM: A Gene/Protein Name Recognition System. Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu, Hongfang Liu. JAMIA (16): 247-255 (2009). Web SearchBibTeXDownload |
| 2008 |
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| 20 | Document Classification for Mining Host Pathogen Protein-Protein Interactions. Guixian Xu, Lanlan Yin, Manabu Torii, Zhendong Niu, Cathy H. Wu, Zhang-Zhi Hu, Hongfang Liu. BIBM 2008, 461-466. Web SearchBibTeXDownload |
| 19 | iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology. Zhang-Zhi Hu, K. Bretonnel Cohen, Lynette Hirschman, Alfonso Valencia, Hongfang Liu, Michelle G. Giglio, Cathy H. Wu. BIBM 2008, 467-472. Web SearchBibTeXDownload |
| 18 | Bioinformatic Databases. Katherine G. Herbert, Junilda Spirollari, Jason Tsong-Li Wang, William H. Piel, John D. Westbrook, Winona C. Barker, Zhang-Zhi Hu, Cathy H. Wu. Wiley Encyclopedia of Computer Science and Engineering 2008. Web SearchBibTeXDownload |
| 2007 |
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| 17 | Dependence network modeling for biomarker identification. Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu. Bioinformatics (23): 198-206 (2007). Web SearchBibTeXDownload |
| 16 | Framework for a Protein Ontology. Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload |
| 15 | A comparison study on algorithms of detecting long forms for short forms in biomedical text. Manabu Torii, Zhang-Zhi Hu, Min Song, Cathy H. Wu, Hongfang Liu. BMC Bioinformatics (8) (2007). Web SearchBibTeXDownload |
| 14 | Mapping Gene/Protein Names in Free Text to Biomedical Databases. Hongfang Liu, Manabu Torii, Zhang-Zhi Hu, Cathy H. Wu. ICDM Workshops 2007, 101-106. Web SearchBibTeXDownload |
| 2006 |
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| 13 | An online literature mining tool for protein phosphorylation. X. Yuan, Zhang-Zhi Hu, H. T. Wu, Manabu Torii, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu. Bioinformatics (22): 1668-1669 (2006). Web SearchBibTeXDownload |
| 12 | Substring selection for biomedical document classification. Bo Han, Zoran Obradovic, Zhang-Zhi Hu, Cathy H. Wu, Slobodan Vucetic. Bioinformatics (22): 2136-2142 (2006). Web SearchBibTeXDownload |
| 11 | BioThesaurus: a web-based thesaurus of protein and gene names. Hongfang Liu, Zhang-Zhi Hu, Jian Zhang, Cathy H. Wu. Bioinformatics (22): 103-105 (2006). Web SearchBibTeXDownload |
| 10 | Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging. Hongfang Liu, Zhang-Zhi Hu, Manabu Torii, Cathy H. Wu, Carol Friedman. JAMIA (13): 497-507 (2006). Web SearchBibTeXDownload |
| 2005 |
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| 9 | Dynamically Generating a Protein Entity Dictionary Using Online Resources. Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu. ACL 2005. Web SearchBibTeXDownload |
| 8 | Literature mining and database annotation of protein phosphorylation using a rule-based system. Zhang-Zhi Hu, Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker, Cathy H. Wu. Bioinformatics (21): 2759-2765 (2005). Web SearchBibTeXDownload |
| 7 | DynGO: a tool for visualizing and mining of Gene Ontology and its associations. Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu. BMC Bioinformatics (6): 201 (2005). Web SearchBibTeXDownload |
| 2004 |
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| 6 | iProLINK: an integrated protein resource for literature mining. Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu. Computational Biology and Chemistry (28): 409-416 (2004). Web SearchBibTeXDownload |
| 5 | The iProClass integrated database for protein functional analysis. Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker. Computational Biology and Chemistry (28): 87-96 (2004). Web SearchBibTeXDownload |
| 4 | The PIR integrated protein databases and data retrieval system. Hongzhan Huang, Zhang-Zhi Hu, Baris E. Suzek, Cathy H. Wu. Data Science Journal (3): 163-174 (2004). Web SearchBibTeXDownload |
| 3 | PIRSF: family classification system at the Protein Information Resource. Cathy H. Wu, Anastasia N. Nikolskaya, Hongzhan Huang, Lai-Su L. Yeh, Darren A. Natale, C. R. Vinayaka, Zhang-Zhi Hu, Raja Mazumder, Sandeep Kumar, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Leslie Arminski, Yongxing Chen, Jian Zhang, Jorge Louie Cardenas, Sehee Chung, Jorge Castro-Alvear, Georgi Dinkov, Winona C. Barker. Nucleic Acids Research (32): 112-114 (2004). Web SearchBibTeXDownload |
| 2003 |
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| 2 | The Protein Information Resource. Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, C. R. Vinayaka, Jian Zhang, Winona C. Barker. Nucleic Acids Research (31): 345-347 (2003). Web SearchBibTeXDownload |
| 2002 |
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| 1 | The Protein Information Resource: an integrated public resource of functional annotation of proteins. Cathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker. Nucleic Acids Research (30): 35-37 (2002). Web SearchBibTeXDownload |
