2012
18Improving Online Access to Drug-Related Information. Jiao Li, Ritu Khare, Zhiyong Lu. HISB 2012, 148. Web SearchBibTeXDownload
17Database resources of the National Center for Biotechnology Information. David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Stephen H. Bryant, Deanna M. Church, Deanna M. Church, Ron Edgar, Scott Federhen, Scott Federhen, Michael Feolo, Yuri Kapustin, Yuri Kapustin, Wolfgang Helmberg, Yuri Kapustin, David Landsman, Zhiyong Lu, Thomas L. Madden, Zhiyong Lu, Thomas L. Madden, Gregory D. Schuler, Lynn M. Schriml, Gregory D. Schuler, Vadim Miller, Ilene Karsch-Mizrachi, Martin Shumway, Gregory D. Schuler, Tugba O. Suzek, Lukas Wagner, Gregory D. Schuler, Lukas Wagner, Martin Shumway, Karl Sirotkin, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Tatiana A. Tatusova, Lukas Wagner, Lukas Wagner, Jian Ye, Eugene Yaschenko, Eugene Yaschenko, Jian Ye. Nucleic Acids Research (40): 13-25 (2012). Web SearchBibTeXDownload
2011
16The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu. BMC Bioinformatics (12): S3 (2011). Web SearchBibTeXDownload
15The gene normalization task in BioCreative III. Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illés Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sérgio Matos, David Campos, Karin Verspoor, Kevin M. Livingston, W. John Wilbur. BMC Bioinformatics (12): S2 (2011). Web SearchBibTeXDownload
14BioCreative III interactive task: an overview. Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu. BMC Bioinformatics (12): S4 (2011). Web SearchBibTeXDownload
13Overview of the BioCreative III Workshop. Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu. BMC Bioinformatics (12): S1 (2011). Web SearchBibTeXDownload
12Recommending MeSH terms for annotating biomedical articles. Minlie Huang, Aurélie Névéol, Zhiyong Lu. JAMIA (18): 660-667 (2011). Web SearchBibTeXDownload
11Database resources of the National Center for Biotechnology Information. David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Stephen H. Bryant, Deanna M. Church, Deanna M. Church, Ron Edgar, Scott Federhen, Scott Federhen, Michael Feolo, Yuri Kapustin, Yuri Kapustin, Wolfgang Helmberg, Yuri Kapustin, David Landsman, Zhiyong Lu, Thomas L. Madden, Zhiyong Lu, Thomas L. Madden, Gregory D. Schuler, Lynn M. Schriml, Gregory D. Schuler, Vadim Miller, Ilene Karsch-Mizrachi, Martin Shumway, Gregory D. Schuler, Tugba O. Suzek, Lukas Wagner, Gregory D. Schuler, Lukas Wagner, Martin Shumway, Karl Sirotkin, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Tatiana A. Tatusova, Lukas Wagner, Lukas Wagner, Jian Ye, Eugene Yaschenko, Eugene Yaschenko, Jian Ye. Nucleic Acids Research (39): 38-51 (2011). Web SearchBibTeXDownload
2010
10Learning to Annotate Scientific Publications. Minlie Huang, Zhiyong Lu. COLING (Posters) 2010, 463-471. Web SearchBibTeXDownload
9Extracting Rx information from clinical narrative. James G. Mork, Olivier Bodenreider, Dina Demner-Fushman, Rezarta Islamaj Dogan, François-Michel Lang, Zhiyong Lu, Aurélie Névéol, Lee B. Peters, Sonya E. Shooshan, Alan R. Aronson. JAMIA (17): 536-539 (2010). Web SearchBibTeXDownload
8Database resources of the National Center for Biotechnology Information. David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Stephen H. Bryant, Deanna M. Church, Deanna M. Church, Ron Edgar, Scott Federhen, Scott Federhen, Michael Feolo, Yuri Kapustin, Yuri Kapustin, Wolfgang Helmberg, Yuri Kapustin, David Landsman, Zhiyong Lu, Thomas L. Madden, Zhiyong Lu, Thomas L. Madden, Gregory D. Schuler, Lynn M. Schriml, Gregory D. Schuler, Vadim Miller, Ilene Karsch-Mizrachi, Martin Shumway, Gregory D. Schuler, Tugba O. Suzek, Lukas Wagner, Gregory D. Schuler, Lukas Wagner, Martin Shumway, Karl Sirotkin, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Tatiana A. Tatusova, Lukas Wagner, Lukas Wagner, Jian Ye, Eugene Yaschenko, Eugene Yaschenko, Jian Ye. Nucleic Acids Research (38): 5-16 (2010). Web SearchBibTeXDownload
2009
7Evaluation of query expansion using MeSH in PubMed. Zhiyong Lu, Won Kim, W. John Wilbur. Inf. Retr. (12): 69-80 (2009). Web SearchBibTeXDownload
6Viewpoint Paper: Evaluating Relevance Ranking Strategies for MEDLINE Retrieval. Zhiyong Lu, Won Kim, W. John Wilbur. JAMIA (16): 32-36 (2009). Web SearchBibTeXDownload
5Summarizing Documents by Measuring the Importance of a Subset of Vertices within a Graph. Shouyuan Chen, Minlie Huang, Zhiyong Lu. Web Intelligence 2009, 269-272. Web SearchBibTeXDownload
2007
4Association Rules in the Relational Calculus. Oliver Schulte, Flavia Moser, Martin Ester, Zhiyong Lu. CoRR (abs/0710.2083) (2007). Web SearchBibTeXDownload
2004
3Predicting subcellular localization of proteins using machine-learned classifiers. Zhiyong Lu, Duane Szafron, Russell Greiner, Paul Lu, David S. Wishart, Brett Poulin, John Anvik, Cam Macdonell, Roman Eisner. Bioinformatics (20): 547-556 (2004). Web SearchBibTeXDownload
2Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations. Duane Szafron, Paul Lu, Russell Greiner, David S. Wishart, Brett Poulin, Roman Eisner, Zhiyong Lu, John Anvik, Cam Macdonell, Alona Fyshe, David Meeuwis. Nucleic Acids Research (32): 365-371 (2004). Web SearchBibTeXDownload
2003
1Automatic Extraction of Clusters from Hierarchical Clustering Representations. Jörg Sander, Xuejie Qin, Zhiyong Lu, Nan Niu, Alex Kovarsky. PAKDD 2003, 75-87. Web SearchBibTeXDownload
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